Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00795 ATGACGGAGTACCGCTCCCCGCCGACCATGAATCTCTGGACCGACGACAACTCCTCCGTCATGGAGGCCTTCATGAGCTCCACCGACCTCTCCTCCCTGTGGCTGgccccgccgcaatccgccgcctcaaccaccactccggggcccgacaccaccagagccccgccgccgcctccgccgTCCCAATCCCAGTCCCTCCTCAACCAGGAGACCCTTCAACAGCGCTTGCAGACGTTAATAGAAGGCGCTAGAGAGAGCTGGACCTACGCAATTTTCTGGCAGTCTTCTTACGACTACTCCTCCGGCGCTTCCCTCCTCGGTTGGGGCGACGGTTACTACAAGGGCGAGGAGGACAAAGGAAAAGGCAAGGCCCCCAAAACGACGTCGCTCGCAGAGCAGGACCACCGCAAGAAAGTTCTCCGCGAGCTCAATTCATTAATTTCTGGTCCTTCTGCTTCGCCCGATGATCTCGACGAGGAGGTAACCGACACGGAGTGGTTCTTTCTCGTTTCCATGACTCAGTCGTTTGTCAACGGCACCGGCCTGCCGGGCCAGGCTTTCTTTAATTCCAGCCCCGTGTGGGTCGCCGGGGCCGACCGGTTATCCGAATCGGCCTGCGAACGGGCCCGGCAGGGGCAGGTGTTTGGGCTTCAGACGCTGGTTTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGCCTCCACGGAGGTTATTTTCCAGAACCCCGATCTGATGAACAAAGTGCGGGATTTGTTCAACTTCAGCAACCCCGACGCGGGGTCGTGGCCGTTGAACTGCGTTGCCACCGATCAGGGCGAGAACGACCCTTCCTCTCTCTGGCTCAACCCTTCTTCCTCTGTTGAAATCAGAGACTCCGCGGTGGCGCCCGCTTCAGCGAATGCAACAGTTAACAAGGCGTTGCAGTTCGAAACCCCGGGCTCCAGCACGCTAACCGAAGCCCCTAGTGTTGTTCACGTCCCCCACGGCAACGCTCAGCACCCGTCGCAGAACAACAAGGGTTTCTTCCCGAGGGAATTGAACTTTTCGAGTTCGTTAAAACCCGAATCCGGTGAAATTCTGAGCTTCGGGGAGAGCAAGAAGAGTTTGTTCCCCGCTGTTACCGTCGAGGAGAAGAACAAGAGGAGCTCAACCGTTTCCAGGAGCACCATTGACGATGGAATGCTCTCCTTCACTTCCGGCGTCATCCTGCCAGCTTCCAATATGAAGTCCGCCGCCACAGGCGGCGACTCCGATCATTCGGATCTGGAAGCTTCCGTGGTGAAAGAGCCAGACGGCGGCAGAGTGGTGGAGCCGGAGAAACGGCCTCGGAAGAGGGGGCGGAAGCCGGCGAACGGCAGAGAGGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGAGAAAAGCTGAACCAAAGATTCTACGCGCTTCGGGCGGTGGTTCCCAACGTGTCGAAGATGGACAAGGCGTCGCTTTTGGGCGACGCCATATCCTACATAAACGAGCTCAAGTCCAAGCTCAATGGGCTGGAATCGGAGAAAGGGGATTTGGAGAAGCAATTGGATTCTGCAAAGAAGGAGCTCGAGCTCACAGTCACAACTAAAAACCCACCTCCTCCGCCTCCACCTGAGAACGAGGCCGATAAAACCACGGCCATGCTGGTTGATTTGGATATAGACGTGAAAATCATTGGTTGGGATGCCATGATTAGGATCCAATGCAGCAAGAAGAACCACCCGGCGGCGAGGTTGATGGCGGCGTTGAAGGAGCTGGACCTGGAAGTGCATCATGCCAGCGTGTCCGTGGTGAATGAATTGATGATTCAACAAGCCACGGTCAACATGGGAAACCGCTTCTACACGCAGGAGCAGCTCCTAGTGGCGCTGTCGTCCAAAGTTGGGGATGCTAGATAA 1914 0.5434 MTEYRSPPTMNLWTDDNSSVMEAFMSSTDLSSLWLAPPQSAASTTTPGPDTTRAPPPPPPSQSQSLLNQETLQQRLQTLIEGARESWTYAIFWQSSYDYSSGASLLGWGDGYYKGEEDKGKGKAPKTTSLAEQDHRKKVLRELNSLISGPSASPDDLDEEVTDTEWFFLVSMTQSFVNGTGLPGQAFFNSSPVWVAGADRLSESACERARQGQVFGLQTLVCIPSANGVVELASTEVIFQNPDLMNKVRDLFNFSNPDAGSWPLNCVATDQGENDPSSLWLNPSSSVEIRDSAVAPASANATVNKALQFETPGSSTLTEAPSVVHVPHGNAQHPSQNNKGFFPRELNFSSSLKPESGEILSFGESKKSLFPAVTVEEKNKRSSTVSRSTIDDGMLSFTSGVILPASNMKSAATGGDSDHSDLEASVVKEPDGGRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLNGLESEKGDLEKQLDSAKKELELTVTTKNPPPPPPPENEADKTTAMLVDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLEVHHASVSVVNELMIQQATVNMGNRFYTQEQLLVALSSKVGDAR 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00795 637 MobiDBLite consensus disorder prediction 35 65 - -
Cca11g00795 637 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 72 252 IPR025610 -
Cca11g00795 637 PANTHER TRANSCRIPTION FACTOR MYC2 11 634 - -
Cca11g00795 637 Coils Coil 500 527 - -
Cca11g00795 637 PANTHER MYC 11 634 IPR045084 GO:0003700|GO:0006355
Cca11g00795 637 MobiDBLite consensus disorder prediction 421 464 - -
Cca11g00795 637 CDD bHLH_AtAIB_like 451 527 - -
Cca11g00795 637 MobiDBLite consensus disorder prediction 35 49 - -
Cca11g00795 637 SMART finulus 460 509 IPR011598 GO:0046983
Cca11g00795 637 Pfam Helix-loop-helix DNA-binding domain 458 503 IPR011598 GO:0046983
Cca11g00795 637 Gene3D - 446 533 IPR036638 GO:0046983
Cca11g00795 637 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 522 IPR036638 GO:0046983
Cca11g00795 637 MobiDBLite consensus disorder prediction 408 464 - -
Cca11g00795 637 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00795 Cca-Chr11 14979177 14981827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00795 1 634 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.090 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00795 bHLH-MYC_N 1.1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00795 K13422 - gmx:100790854 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00795 11 14979177 14981827 Cca11g00795 11 14979177 14981827 ECH