Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00789 ATGTTTGTTCCCAAAATCAAGTTGCACCAACAACAAAGGGCATACAAGTGCCACAAGGTAGGCCACAACGCTAGGAAATGTAAGCTACCTCCACCTGTTCTAGATGATGTGACTAAGACTAAAACTATCATAAACAATGCACCAGTCGATGTTTGTTCCCAAAATCAAGTTGCACCAACAACAAAGGGCATAGTAAATGTTAATCCTAGTCATGATAATACTGCAAATACAATTGTTGCTACAACTattggaaatgcaattgctactgcaactattggaaatgcagttgctatGAATGTTGCAAGTGTTGCTGGTCCACATGTTTCACTGCCAAAGAGGAAAAATGAAGTTGCTAACATGGAGGTAACTAGTGTTTCAAAGAAAGCTAAAACAGGGAAGAAAAACTTAGGGATTGTTTGCATCCTATATGTTTCTTTGTCACGTGGTTTGCTCACATTCATAAGTTCCCAAAATCAAGTTGCACCAACAACAAAGGGCATAGTAAATGTTAATCCTAGTCATGATAATactgcaaatacaattgttgctacaactattggaaatgcaattgctactgcaactAttgggtcgttacagaagatgcaaAGCTCGATGGGAGATGTGGCTAAGGACCTTGCAGCTGGGACTATTGGAGGGGCAGCACAGTTGATATGTGGACACCCCTTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCTGCACCACTCCCTGGTCAGCTTCCCAAGTATTCAGGTGCATTTGATGCTGTCAAGCAGACAATAGCAGCTGAAGGACCAAGGGGTTTATACAAAGGCATGGGTGCCCCACTTGCTACTGTAGCAGCCTTCAATGCTGTCCTGTTTACAGTGAGGGGACAAATGGAAACATTAGTGAGGTCCCATCCTGGTGCCCCCCTCACAGTGAATCAGCAGTTTGTTTGCGGAGCTGGAGCTGGAGTTGCTGTTTCCATTCTTGCTTGCCCAACTGAATTGATCAAATGCAGGTTGCAGGCACAAAGTGCGCTTGCTGGCTCAGAAACAGCTACTGTGGCTGTTAAGTATGGAGGACCCATGGATGTGGCCAGGCATGTTCTCAGGTCAGAAGGGGGCACGAGAGGTCTTTTCAAGGGCCTTGTTCCCACTATGGGGCGTGAGATACCTGGAAATGCTATAATGTTTGGTGTATATGAAGCATTAAAGCAAAAGTTTGCAGGAGGCACTGATACTTCTGGCCTAAGTAGAGGTTCTCTGATTGTTGCTGGAGGCTTGGCTGGAGCTTCCTTCTGGCTCATTGTTTACCCAACTGATGTTATTAAGAGTGTTATTCAAGTAGATGATCACAGAAACCCAAAATTTTCTGGTTCATTTGATGCATTCAGGAAGATTCGAGCTTCAGAGGGGATCAAAGGCTTGTATAAGGGTTTTGGTCCTGCAATGGCCCGAAGTGTTCCTGCAAATGCAGCATGCTTCTTGGCATATGAGATGACAAGATCAGCTCTGGGATGA 1506 0.4137 MFVPKIKLHQQQRAYKCHKVGHNARKCKLPPPVLDDVTKTKTIINNAPVDVCSQNQVAPTTKGIVNVNPSHDNTANTIVATTIGNAIATATIGNAVAMNVASVAGPHVSLPKRKNEVANMEVTSVSKKAKTGKKNLGIVCILYVSLSRGLLTFISSQNQVAPTTKGIVNVNPSHDNTANTIVATTIGNAIATATIGSLQKMQSSMGDVAKDLAAGTIGGAAQLICGHPFDTIKVKLQSQPAPLPGQLPKYSGAFDAVKQTIAAEGPRGLYKGMGAPLATVAAFNAVLFTVRGQMETLVRSHPGAPLTVNQQFVCGAGAGVAVSILACPTELIKCRLQAQSALAGSETATVAVKYGGPMDVARHVLRSEGGTRGLFKGLVPTMGREIPGNAIMFGVYEALKQKFAGGTDTSGLSRGSLIVAGGLAGASFWLIVYPTDVIKSVIQVDDHRNPKFSGSFDAFRKIRASEGIKGLYKGFGPAMARSVPANAACFLAYEMTRSALG 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00789 501 Pfam Mitochondrial carrier protein 418 500 IPR018108 -
Cca11g00789 501 Pfam Mitochondrial carrier protein 208 298 IPR018108 -
Cca11g00789 501 Pfam Mitochondrial carrier protein 306 404 IPR018108 -
Cca11g00789 501 ProSiteProfiles Solute carrier (Solcar) repeat profile. 206 297 IPR018108 -
Cca11g00789 501 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 205 501 - -
Cca11g00789 501 ProSiteProfiles Solute carrier (Solcar) repeat profile. 412 499 IPR018108 -
Cca11g00789 501 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 205 501 - -
Cca11g00789 501 ProSiteProfiles Solute carrier (Solcar) repeat profile. 306 402 IPR018108 -
Cca11g00789 501 SUPERFAMILY Mitochondrial carrier 206 494 IPR023395 -
Cca11g00789 501 Gene3D Mitochondrial carrier domain 201 500 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00789 Cca-Chr11 14840256 14851375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00789 226 500 Antiporters AT1G79900 33.452 7.97e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00789 K15109 - gmx:100791908 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00789 11 14840256 14851375 Cca11g00789 11 14840256 14851375 ECH