Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00785 ATGTCTCCGCCACTGCTGGTTACCGAAGATGAAGGGCAGAGCAATGCCTCAATGGTAGCAACTGCATCTTCACAATCCTTGGACTGTTTCTCACCAAATGAGGCAAGATTGAAAGAACGCAATTACCTCGGATTGTCAGATTGCTCTTCTGTGGACAGTTCTACTGTCCCAAGCTTGTCTGCTGAGAAAAAGAACCTGAATTTGAAGGCCACTGAGTTGAGACTGGGCCTTCCTGGATCCCAGTCACCCGATAGGGATCCGGGTCTTTTCTCACTGAATTCAGCAAAACTTGATGAGAAGCCACTGTTTCCTTTGCTTCCTACAAAAGATGGAATCTGCTCATTGTCCCAAAAACCTGTGGTTTCAGGAAGCAAAAGAGGTTTTGCTGATACTATGGACCCTGAGTTTCCTGGCAATGCAGGGATAAACATAATGCTATCTCCTAAACCTTCTGGAGCTCAGCTGACCATAGTGAAAGAAATTCCAAGCAAGGTGTTACAAGAAAGGCCTTCTGCAGCAAATGGAACTGGTCATAACCATACCGGAGCTTCCATCAGTGGCAGTGCACCTCCTGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCTTTGGCAACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCGGGTCCAGCTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCTTATCTGAGGAAGGTAGATCTAAGAAATTATACAACATACCAGGAGCTCTCTTCTTCCCTTGAGAAGATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGCTCCGGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCAGAATATGTACTCACCTATGAGGATAAAGATGGTGACTGGATGCTTGTAGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAATCCAAGAGCAGGAGCTAG 1050 0.46 MSPPLLVTEDEGQSNASMVATASSQSLDCFSPNEARLKERNYLGLSDCSSVDSSTVPSLSAEKKNLNLKATELRLGLPGSQSPDRDPGLFSLNSAKLDEKPLFPLLPTKDGICSLSQKPVVSGSKRGFADTMDPEFPGNAGINIMLSPKPSGAQLTIVKEIPSKVLQERPSAANGTGHNHTGASISGSAPPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSSLEKMFSCFTLGQCGSHGAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00785 349 MobiDBLite consensus disorder prediction 168 196 - -
Cca11g00785 349 SUPERFAMILY CAD & PB1 domains 227 330 - -
Cca11g00785 349 Gene3D - 226 343 - -
Cca11g00785 349 PANTHER AUXIN-INDUCED PROTEIN 2 342 - -
Cca11g00785 349 MobiDBLite consensus disorder prediction 169 191 - -
Cca11g00785 349 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
Cca11g00785 349 Pfam AUX/IAA family 71 340 IPR033389 -
Cca11g00785 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 342 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00785 Cca-Chr11 14685027 14690177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00785 243 329 B3 DNA Binding Superfamily AT1G19220 31.034 1.04e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Cca11g00785 AUX_IAA 9.5e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00785 K14484 - gmx:100789251 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00937 06 22963500 22968577 Cca11g00785 11 14685027 14690177 PCT