Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00782 ATGGAGCTTTCTCAACTTGGTTTCCTTGATGAGTTAGTTGCTCCAAGAAGAGACACATGGAACGCTTTCTCCACTGCCTTCTGTGACCTTCTTCCCAATGCTTGGACTTTCGACTCTTTCCTTGAGACCCCTTCTTTGCCCCCATTTCCTGCATTGGACCGCAGATTCGAATGCCCCTACTCCACCCAAGTGCCTCCTTCCTACCCTTTTTCCGATGCCTTCGCAATGCCATTGAGTGATGACCCTCCACCACTTCCACCGTCTCTCCAGGCTCAAGAGGTTGCCTTTCGTGACAACACCCACTTTGGAGAAACCAAGGGTGTCTGCAAAGTTGAGGAGCAGGGCACGGAGGTTGTTGTTCCTCTCTTCAACGTGGGCCTCTGTGATGATCGAGACAGAAAGCCCAAGCCCAAGAAGCTTGAGGGGCAGCCCTCCAAGAATCTCATGGCGGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCCAAGATCAGCAAGATGGATAGGACTTCTATTCTTGGGGATACCATAGACTACATGAAAGAGCTTCTAGAGAGGATTGGTAAGTTGCAAGAGGAAGAGGGGGAAGAGGGCACAAGTCAGATGAATCTGTTGGGCTTTTCAAAGGAACAACTCAAGCCAAATGAAGCAATAGTAAGAAACTCCCCCAAGTTTGATGTTGAGAGGAGAGACCAGGACACTAGGATCAGCATCTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACTGTCAATACCTTAGAAGCATTAGGCCTAGAGATTCAGCAATGTGTTATAAGTAGCTTCAATGACTTTTCAATGGAAGCATCTTGTTCTGAGGTAGCCGAACAGAGAAATTGTATTAGCCATGAAGAGATAAAACAAGCACTTTCCAGAAATGCAGGCTTTGGTGGGAAATGTCTCTAG 951 0.4763 MELSQLGFLDELVAPRRDTWNAFSTAFCDLLPNAWTFDSFLETPSLPPFPALDRRFECPYSTQVPPSYPFSDAFAMPLSDDPPPLPPSLQAQEVAFRDNTHFGETKGVCKVEEQGTEVVVPLFNVGLCDDRDRKPKPKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEGEEGTSQMNLLGFSKEQLKPNEAIVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVISSFNDFSMEASCSEVAEQRNCISHEEIKQALSRNAGFGGKCL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00782 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Cca11g00782 316 CDD ACT_UUR-ACR-like 242 282 - -
Cca11g00782 316 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 316 - -
Cca11g00782 316 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 316 - -
Cca11g00782 316 SMART finulus 148 197 IPR011598 GO:0046983
Cca11g00782 316 Pfam Helix-loop-helix DNA-binding domain 148 191 IPR011598 GO:0046983
Cca11g00782 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 206 IPR036638 GO:0046983
Cca11g00782 316 Gene3D - 150 225 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00782 Cca-Chr11 14551284 14553340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00782 69 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 54.475 1.46e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00782 HLH 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00782 - - gmx:100790319 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00934 06 22925800 22928056 Cca11g00782 11 14551284 14553340 PCT