Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00775 ATGAACAACTCAAGGATGGTGCATGTTCTCACGACCATCATTTCCTTCCTCGTACTGTCCCAAACCGTGAACTCAGTTTCTATCAACTTCCCTACTTTCACGCCGTACACAAACGCCATCACCCTCGAAGGCGATGCCAATGTTTCCGAAGGCGCAATTTATCTCACACCCGCGACTCCCTACAACGCGGGTAGAGCCTCTTATGCTGCACCCGTGCGCCTCTGGGACGCCCAAACGGGCCGGCTCGCGGGCTTCAACACGACCTTTTCCTTTGTCGTTGGGCCATACGGGCCCGGGCTCATTGGTGACGGCATCGCGTTCTTCCTCGGCCCATTCAACTCCAACATCCCGCAAAACTCAAGTGGCGGCTACCTCGGACTCTTCAGTTCCGACACCGCGCTTAATGTTTACGAAAACCAAGTGGTGGCTGTGGAATTTGACTCCTTCAGTGGGAACCCATGGGACCCACCCTATGCCCACGTGGGCCTTGATATTAACTCCATTGCTTCGGTGACGACGGAAGAGTGGGAAACTGGAAATGTTACGAATGGGTTTGTTGCGTATGCCACTGTGAGTTACGAGCCTGTGGGGAAGAACTTGGACGTGGTTGTGACGTACCCTGGAAGCCGTTTGAACGAGACTGAAACTAGCCTCTCGTTTGAGATTGATTTGAGGACCGTTCTGCCAGAATGGGTTAGAATTGGATTCTCTGGTGCCACGGGAAGCTTGGTTGAAATACACAAGGTCCTTTCTTGGACCTTCAATTCTAGCTTCTACTAG 780 0.5256 MNNSRMVHVLTTIISFLVLSQTVNSVSINFPTFTPYTNAITLEGDANVSEGAIYLTPATPYNAGRASYAAPVRLWDAQTGRLAGFNTTFSFVVGPYGPGLIGDGIAFFLGPFNSNIPQNSSGGYLGLFSSDTALNVYENQVVAVEFDSFSGNPWDPPYAHVGLDINSIASVTTEEWETGNVTNGFVAYATVSYEPVGKNLDVVVTYPGSRLNETETSLSFEIDLRTVLPEWVRIGFSGATGSLVEIHKVLSWTFNSSFY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00775 259 CDD lectin_legume_LecRK_Arcelin_ConA 26 258 IPR001220 GO:0030246
Cca11g00775 259 PANTHER LECTIN 9 257 - -
Cca11g00775 259 Pfam Legume lectin domain 26 257 IPR001220 GO:0030246
Cca11g00775 259 PANTHER CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN 9 257 - -
Cca11g00775 259 ProSitePatterns Legume lectins alpha-chain signature. 228 237 IPR000985 -
Cca11g00775 259 ProSitePatterns Legume lectins beta-chain signature. 142 148 IPR019825 -
Cca11g00775 259 PIRSF Plant_L_lectin 1 259 IPR016363 GO:0030246
Cca11g00775 259 Gene3D - 23 259 - -
Cca11g00775 259 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 258 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00775 Cca-Chr11 14393048 14394069 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00775 13 258 Receptor kinase-like Gene Family AT5G10530 36.719 3.48e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00775 - - gmx:100779326 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00922 06 22805548 22806390 Cca11g00775 11 14393048 14394069 PCT
Cca11g00775 11 14393048 14394069 Cca06g00921 06 22801081 22802267 PCT