Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00773 ATGGCTTTTTTCAGTTCAACTTCATGCTCTAATCAAACCAACAATACCCCATTGTTCATATTTATCATCTTCATCACTTTGTTCCACACAATCTTCACCACAGTAGAGTCCGTTTCCTTCAACTTCTCATCCTTCAAGCAAAACCTGAATAATCTAATAGACTTCAAGGGTGATGCGTTTTCCTCAAACGGTGTTCTGCAGCTCACAAAGAACCAAATTGATGACAGCATCACATTCAGCGTTGGTCGAGCCTCGTATGACCAACCAGTGAGGCTTTGGGATAGAAGAACGAAGAAGCTCACGGACTTCACCACCCACTTCTCTTTTGTAATGAGAGCCGTTGACCCGACACGTTTCGGTGATGGGTTATCATTCTTCATTGCGCCGTTTGATTCTGTGATCCCAAACAATTCAGCTGGTGGGTACCTTGGCCTATTCAGCAACGAATCCGCGTTGGACACTAGCAAAAATCAGTTAGTGGCGGTTGAGTTCGACAGTTTCATGAACGATTGGGATCCGAGCTCTGATCACGTAGGGATCAATGTCAATTCCATTAAATCAGTGGCGAATGTCACTTGGAGAAGCAGCATTAAAAACGGGTCAGTTGCAAATACTTGGATATGGTATAACTCCACAACCAAAAATCTCTCTGTGTTCCTTACTTATGCTAATAATCCAACTTTTAGTGGAAATTCTAGTCTTTGGTATGTGATTGATTTGAGGGAGGTGTTGCCGGAGTTTGTTAGAGTAGGCTTTTCTGCTGCCACGGGTCAATGGATTGAAATACACAACATCCTCTCTTGGTCATTCAGTTCAAACTTGGATGAGCAGGGTAGGAAAAAGGTTAAGGTTGGTTTAGTATCTGGTTTAAGTGTTGGTTTTGGTTGTTTAGCTTGTGGTGTTGGTCTAATATGGTTTATCTTTTGGAGAAGGAGAAATGGACCAAAGGGTATAAGGGAAGACAACACAGGTGTTGATGCTTCCATAGAGGATGAGTTTGAGAGAGGAACTGGTCCAAAGAGGTTCACCTATAGGGAACTAAGCAATGCAACCAACAACTTTGCAGAAGAAGGAAAGCTAGGAGAAGGTGGATTCGGAGGAGTTTACAAAGGTTTAGTTGTAAACTCCAACCTTGAAGTGGCAGTGAAGAGGGTTTCGAAAACGTCAAAACAAGGGAAAAAGGAATATGTATCAGAAGTGAGAGTTATCAGCCGACTGAGACATAGAAACTTGGTTCAACTCATAGGATGGTGCCATGAACAAGGTGAGCTTCTACTTGTATATGAATACATGCCTAATGGAAGCCTTGATTCACATCTATTTGGAAATAGGGTCATGCTTTCATGGGGGGTGAGATACAAAGTAGCCTTAGGTTTGGCATCTGCTCTTCTTTATCTTCATGAGGAGTGGGAACAATGTGTGGTGCATAGGGATATTAAGGCAAGTAATGTGATGTTGGATGCAAATTTCAATGCCAAGCTTGGTGACTTCGGTCTTGCAAGGCTAGTGGACCATGAACTTGGTTCTCAAACCACAGTTTTGGCAGGGACCATGGGGTACCTAGCCCCAGAGTGTGTGACCACAGGGAAATCAAGCAAGGAGTCCGATGTGTACAGCTTTGGTGTTGTTGCACTTGAAATCACATGTGGTAGAAGGCCTGTGGAAGTGAAAGAAGAGCCTGGGAAAGTTAGGCTTGTGGAGTGGGTGTGGAGCCTCTATGGAAGAGGGAAACTGCTTGAAGCAAGTGATGAGAAATTAAACTGGGAATTTGATGAACAACAAATGGAATGCTTGATGGTTGTTGGGTTGTGGTGTTGTCACCCTGATCACACCACGAGACCCTCCATTAGGCAAGTGATTAGTGTCCTCAATTTTGAAGCCCCTTTGCCTAGTCTTCCATCACAGTTGCCTGTGGCAAGGTACTTTGCACCTCCCATGGATATGTGCAAATTCTCCTACACTTCATCTGCTGCTACAAGCTCAACTACCAAAGGATCAAGCTCATACTCATCATCAATATCCGCAGGGTCCAGAAAATCTCTATTGTAG 2049 0.4368 MAFFSSTSCSNQTNNTPLFIFIIFITLFHTIFTTVESVSFNFSSFKQNLNNLIDFKGDAFSSNGVLQLTKNQIDDSITFSVGRASYDQPVRLWDRRTKKLTDFTTHFSFVMRAVDPTRFGDGLSFFIAPFDSVIPNNSAGGYLGLFSNESALDTSKNQLVAVEFDSFMNDWDPSSDHVGINVNSIKSVANVTWRSSIKNGSVANTWIWYNSTTKNLSVFLTYANNPTFSGNSSLWYVIDLREVLPEFVRVGFSAATGQWIEIHNILSWSFSSNLDEQGRKKVKVGLVSGLSVGFGCLACGVGLIWFIFWRRRNGPKGIREDNTGVDASIEDEFERGTGPKRFTYRELSNATNNFAEEGKLGEGGFGGVYKGLVVNSNLEVAVKRVSKTSKQGKKEYVSEVRVISRLRHRNLVQLIGWCHEQGELLLVYEYMPNGSLDSHLFGNRVMLSWGVRYKVALGLASALLYLHEEWEQCVVHRDIKASNVMLDANFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRRPVEVKEEPGKVRLVEWVWSLYGRGKLLEASDEKLNWEFDEQQMECLMVVGLWCCHPDHTTRPSIRQVISVLNFEAPLPSLPSQLPVARYFAPPMDMCKFSYTSSAATSSTTKGSSSYSSSISAGSRKSLL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00773 682 PANTHER - 24 657 - -
Cca11g00773 682 CDD STKc_IRAK 368 624 - -
Cca11g00773 682 Gene3D Phosphorylase Kinase; domain 1 339 430 - -
Cca11g00773 682 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 275 IPR013320 -
Cca11g00773 682 PANTHER RECEPTOR LECTIN KINASE 24 657 - -
Cca11g00773 682 SUPERFAMILY Protein kinase-like (PK-like) 338 651 IPR011009 -
Cca11g00773 682 ProSitePatterns Protein kinases ATP-binding region signature. 360 383 IPR017441 GO:0005524
Cca11g00773 682 ProSiteProfiles Protein kinase domain profile. 354 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00773 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Cca11g00773 682 Gene3D - 35 287 - -
Cca11g00773 682 Pfam Protein kinase domain 355 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00773 682 Pfam Legume lectin domain 38 279 IPR001220 GO:0030246
Cca11g00773 682 ProSitePatterns Legume lectins beta-chain signature. 160 166 IPR019825 -
Cca11g00773 682 ProSitePatterns Legume lectins alpha-chain signature. 244 253 IPR000985 -
Cca11g00773 682 CDD lectin_legume_LecRK_Arcelin_ConA 38 274 IPR001220 GO:0030246
Cca11g00773 682 SMART serkin_6 354 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00773 682 Gene3D Transferase(Phosphotransferase) domain 1 431 644 - -
Cca11g00773 682 MobiDBLite consensus disorder prediction 658 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00773 Cca-Chr11 14356737 14358866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00773 23 641 Receptor kinase-like Gene Family AT5G10530 52.215 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca11g00773 Pkinase 8.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00773 - - gmx:100777201 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00921 06 22801081 22802267 Cca11g00773 11 14356737 14358866 PCT