Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00772 ATGACTCTTCAGCTTTGTTTCTGGCTCGGTGCTTGTTCTGAGTTGAGAACATTTAGAAGAGTTTTAAGGGAAACCAACAAAAACAATTCTCAAAATTCTGTGGTCATGATGAAAACAAGGAACCCTCAAGAGTTGGTGGTTGACAATGGAATTCTTTCCCTCACTTTTTCAACACCTGAGGGTTTCCTCATTGGAATGTCATATAACGGAATTGAAAATATATTTGACGAGGAAAATGAAGATCAAGATAGAGGGTACCTTGACGTTGTTTGGAACACACCAGGAAAGCCTAGCAATTTTCAGAGAATCCACGGGACAAATTTTTCGGTTATAGCAGCTGAAGAGGATATGGTGGAGCTTTCATTCTCAAGAACATGGACATCTTCCATGAATGGCTCAAGTGTACCCATAAACATTGACATGAGATACATTTTGCGAGGTGGTGATTCAGGGTTTTATACATATGCAATATTTGATCGCCCTGAAGGATTTCCCTCGGTGGAGATTGACCAAATTAGGATTGTTTATAAACTCAACAAAGACAGGTTCAACTATATGGCTATATCAGATGAAAGGCAAAGAAGAATGCCAACAATGAGAGATAGAGAAACAGGGCAAGTCCTTGCATACCCTGAAGCAGTTCTATTAACAAGACCAACCAACCCAGAATTCAGAGGAGAGGTGGATGACAAATACCAGTACTCTTGTGAGAACATGGTCAACTCTGTTCATGGATGGATCAGTGTTCATTCTGATGCACCCATGGGCTTCTGGATGATAACACCGAGTAATGAATTTCGCAATGCTGGGCCCATCAAACAGGACCTTACTTCCCATGTTGGCCCCATCACCCTCTCGATGTTTGTGAGCACTCACTATGCTGGGAAGGAGGTAACCATGCAATTTCAAGAAGGGGAGACATATACAAAGGTATTTGGCCCTGTATTTGTCTACGTTAACTCTGCTTCAAGCGAGGATGATACACTATCCCTCTGGTCAGATTTCAGCAGGGGAGTAGTTTTTGGAATATTACTAGTCCAAGATTGGAACTTCAGAGAAGGTAAACTTCTATATGCTAACAATGCTTATGTGGGCCTAGCTTTGCCTGGAGATGGAGGATCATGGCAGATAGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTGATTCAAAGGGTTTCTTCATGATAAATAATATTGTGCCTGGTGACTATAATTTGTATGCATGGGTCCCTGGCTTCATTGGTGATTACAGATATAATGCTACAATCACCATCACACCAGGAGGAGTCATCAAATTGGATTCACTTGTGTATGTTCCTCCAAGAAATGGACCAACCATGTGGGAAATTGGGGTTCCAGATCGCACTGCTGCAGAATTCTATGTACCAGACCCTTACCCTACGCTCATGAACAAATTATACAACGAACAGCGCAGAGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTACACTGATTTATATCCAAATGATGATCTTGTTTACACTGTTGGAGTTAGCAAGTATAATAAAGATTGGTTTTTTGCTCATGTTACAAGAAGCACAGGAAATAAGACATACCAACCAACAACATGGCAGATTATATTTGAACATAAAAATCAAATAATAAGAGGAAACTACACATTGCAACTGGCCTTGGCATGCACTGCTGATGCTGACCTGCAGGTTCGGTTCAATGACCCTAGTGCTAATCCACCAGACTTTGCAACGGGTAAAATGGGAGGAGATAATGCCATAGCAAGGCATGGCTTGCATGGATTGTATAGGCTATTCAGCATTAACGTACCAAGTGATCGCATTGTGAAAGGAACCAACACCATCTATCTGAAGCAGTCAAGAGCCATGAATCCTTTTCAAGGAGTTATGTATGATTATATCCGTTTAGAACGTCCTCCATTGACACTCATGTGA 1932 0.4156 MTLQLCFWLGACSELRTFRRVLRETNKNNSQNSVVMMKTRNPQELVVDNGILSLTFSTPEGFLIGMSYNGIENIFDEENEDQDRGYLDVVWNTPGKPSNFQRIHGTNFSVIAAEEDMVELSFSRTWTSSMNGSSVPINIDMRYILRGGDSGFYTYAIFDRPEGFPSVEIDQIRIVYKLNKDRFNYMAISDERQRRMPTMRDRETGQVLAYPEAVLLTRPTNPEFRGEVDDKYQYSCENMVNSVHGWISVHSDAPMGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMQFQEGETYTKVFGPVFVYVNSASSEDDTLSLWSDFSRGVVFGILLVQDWNFREGKLLYANNAYVGLALPGDGGSWQIESKGYQFWTQADSKGFFMINNIVPGDYNLYAWVPGFIGDYRYNATITITPGGVIKLDSLVYVPPRNGPTMWEIGVPDRTAAEFYVPDPYPTLMNKLYNEQRRDKFRQYGLWERYTDLYPNDDLVYTVGVSKYNKDWFFAHVTRSTGNKTYQPTTWQIIFEHKNQIIRGNYTLQLALACTADADLQVRFNDPSANPPDFATGKMGGDNAIARHGLHGLYRLFSINVPSDRIVKGTNTIYLKQSRAMNPFQGVMYDYIRLERPPLTLM 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00772 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 36 639 - -
Cca11g00772 643 SUPERFAMILY Galactose-binding domain-like 443 636 IPR008979 -
Cca11g00772 643 Pfam Polysaccharide lyase family 4, domain III 446 635 IPR029411 -
Cca11g00772 643 Gene3D - 36 336 IPR014718 GO:0030246
Cca11g00772 643 SUPERFAMILY Starch-binding domain-like 375 436 IPR013784 GO:0030246
Cca11g00772 643 SUPERFAMILY Galactose mutarotase-like 39 327 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca11g00772 643 Pfam Polysaccharide lyase family 4, domain II 360 432 IPR029413 -
Cca11g00772 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 36 639 - -
Cca11g00772 643 CDD RGL4_C 448 636 - -
Cca11g00772 643 Pfam Rhamnogalacturonate lyase family 30 228 IPR010325 -
Cca11g00772 643 CDD RGL4_M 336 436 IPR029413 -
Cca11g00772 643 Gene3D - 444 636 - -
Cca11g00772 643 CDD RGL4_N 44 328 - -
Cca11g00772 643 Gene3D - 359 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00772 Cca-Chr11 14333769 14341117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00772 45 639 Polysaccharide Lyase AT1G09910 52.733 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00772 K18195 - gmx:100776664 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00920 06 22786384 22796545 Cca11g00772 11 14333769 14341117 PCT