Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00771 ATGCCAACGCCTGAAGATAGAACTACGGGGAAACGCCTTGATTATGATGAAGCTGTTCTAATAACCAACCCTAGTAACCCACAGCTTCAAGGAGAGGTTGATGACAAATACCAATACTCATGTGAGAACAAAGACAATAAGCTTCATGGGTGGATTAACATGGACTCAAGGTCCAATGAATCTGTGGGCTTCTGGATGATAACACCAAGTAACGAGTTCCGTAGTGGTGGCCCAATTAAGCAAGGCCTCACTTCTCATGTTGGCCCTACAACCCTCAATATACTTCATACCACTCACTACGCGGGGAAGGAGGTAACCATGGCATTCAAAGAAGGGGAACCCTTCAAGAAAGTTTATGGCCCCGTTTTTGCTTATCTAAACTCAGTTTCAAGTGGCCATGATTCACAAGCCCTATGGAGTGATGCTATACAACAGATGTCCGAGGAAATTAAAAGTTGGCCCTATGATTTCCCAAAATCAGATGAGTTTTTCCCAGCCAATAAACGGGGAAGAGTGGAAGGACAATTACTAGTCCAAGACAGATACATTAAAGGAGGGAAATTTGTATATGGCCACAATGCTTATGTTGGTTTGGCTCTGCCTGGAAATGAGGGATCATGGCAAAGGCAAAGCAAGGGTTACCAATTCTGGAGTGGAGCTGACAAAGTGGGTCACTTCACAATTGAAAATGTTGTACCAGGAGACTACGATTTATATGCATGGATTCCAGGAATTTTTGGGGACTATAAATATAACACTACTATAACCATCACACCAGGATGTGTTATCCAATTGGGTTCACTAATATACAATCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTCTATGTTCCAGACCCTTATCCCAACCTCATGAACCCATTATACATTGGAAAACCAAGACACAAGTTAGTCCAAAACTCAATCAATAATAATTATCAGTTTTAA 978 0.4223 MPTPEDRTTGKRLDYDEAVLITNPSNPQLQGEVDDKYQYSCENKDNKLHGWINMDSRSNESVGFWMITPSNEFRSGGPIKQGLTSHVGPTTLNILHTTHYAGKEVTMAFKEGEPFKKVYGPVFAYLNSVSSGHDSQALWSDAIQQMSEEIKSWPYDFPKSDEFFPANKRGRVEGQLLVQDRYIKGGKFVYGHNAYVGLALPGNEGSWQRQSKGYQFWSGADKVGHFTIENVVPGDYDLYAWIPGIFGDYKYNTTITITPGCVIQLGSLIYNPPRNGPTIWEIGIPDRSAAEFYVPDPYPNLMNPLYIGKPRHKLVQNSINNNYQF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00771 325 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 323 - -
Cca11g00771 325 CDD RGL4_M 168 268 IPR029413 -
Cca11g00771 325 SUPERFAMILY Galactose-binding domain-like 275 300 IPR008979 -
Cca11g00771 325 Pfam Polysaccharide lyase family 4, domain II 193 264 IPR029413 -
Cca11g00771 325 Gene3D - 164 265 - -
Cca11g00771 325 Gene3D - 13 144 IPR014718 GO:0030246
Cca11g00771 325 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 323 - -
Cca11g00771 325 SUPERFAMILY Starch-binding domain-like 164 266 IPR013784 GO:0030246
Cca11g00771 325 SUPERFAMILY Galactose mutarotase-like 29 130 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00771 Cca-Chr11 14290785 14292786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00771 1 307 Polysaccharide Lyase AT1G09910 56.634 2.71e-128 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00771 K18195 - gmx:100792575 612.068