Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00768 ATGGCGCCACCATCCGATGACATGCCACCAACACCCCAGGCCCAAGAGGCCAGCCAAGGCCCAAGAAACACCGTGATAAAGTGCCCCAGATGCGACTCCTCCAACACCAAATTCTGCTACTACAACAACTACAGCTTGTCCCAGCCTCGGCACTTCTGCAAGACGTGCCGAAGGTACTGGACAAACGGTGGAGCCTTGCGCAACGTCCCAATTGGAGGAGGGTGCAGAAAGAACAAAAAGCCCAAGCCCACTACCTCATCATCGTCATCATCCTCGTCCAGACTCTCCTATGAGCCCAAGGACTTTCAATTTCACAACCTCTCAGTTCCACCCTCCGTTGAGTTTCACGTCGGAGGCTTGTCCTATCCTTCCAGGCTccaccatcaccatcaccaccaccctcctcctccacccaccaccaTGTTCAGCCAGTTTTCCTCCTTTGGAGACGCTTCTGGCTTCCAACTGGACCCTCCTCCTGCGGCCGCCGCGAATCCTCTCATGGGCCTGGCTCCACCCAGTCCCAACCTCTGGGCCCTGGGCCAGTCTCAAAGCCCAGCACTGCCTGACCCGGTGACCGGTTCGATGCAATCCGTTCATGGCAACCTCGCTTCCTCCATTGAGTCACTGAGCAACATGAACCAGGACATGCACATGAAGATGCAGCAGCAGCGTTTCGCGGCCATGATGTTCGGTGGGGAcagcggcagcggcagcagcagccaaaagagttacggcggcggcggcggcagcggcgTTTCGCATTCGCAAACCGTTGGTGGTTTTGACATTCAGAAACCGCAACCGATTCTGTTCCAGAACCTCGAAATCTCGAAGCCACAGAATCTGCCAGGTGGCGGTTCCGGGAAAGGAGGCGCGGCTTCGGAGACAGTGCCCCTTATACCCACCGAATGGTTCTTTGATAACCCCTTTTCCTCAGTGAACCCTGCAACAGCTTCAGCCAATGGTGGAAACGTTAACAATGGGAACCAGAATGACTTCAACAACTGGGGTGGTGTTCATGCTTGGGGGAATTTCAATGGTTTGCCCTAG 1053 0.4957 MAPPSDDMPPTPQAQEASQGPRNTVIKCPRCDSSNTKFCYYNNYSLSQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKPKPTTSSSSSSSSRLSYEPKDFQFHNLSVPPSVEFHVGGLSYPSRLHHHHHHHPPPPPTTMFSQFSSFGDASGFQLDPPPAAAANPLMGLAPPSPNLWALGQSQSPALPDPVTGSMQSVHGNLASSIESLSNMNQDMHMKMQQQRFAAMMFGGDSGSGSSSQKSYGGGGGSGVSHSQTVGGFDIQKPQPILFQNLEISKPQNLPGGGSGKGGAASETVPLIPTEWFFDNPFSSVNPATASANGGNVNNGNQNDFNNWGGVHAWGNFNGLP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00768 350 MobiDBLite consensus disorder prediction 1 24 - -
Cca11g00768 350 Pfam Dof domain, zinc finger 25 80 IPR003851 GO:0003677|GO:0006355
Cca11g00768 350 MobiDBLite consensus disorder prediction 125 144 - -
Cca11g00768 350 MobiDBLite consensus disorder prediction 80 97 - -
Cca11g00768 350 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Cca11g00768 350 MobiDBLite consensus disorder prediction 232 262 - -
Cca11g00768 350 MobiDBLite consensus disorder prediction 70 97 - -
Cca11g00768 350 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 17 347 - -
Cca11g00768 350 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Cca11g00768 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 347 IPR045174 GO:0003700|GO:0006355
Cca11g00768 350 MobiDBLite consensus disorder prediction 234 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00768 Cca-Chr11 14209004 14210056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00768 26 347 C2C2-Dof Transcription Factor Family AT5G65590 38.066 2.00e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca11g00768 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00768 - - ccaj:109819084 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00910 06 22630010 22631712 Cca11g00768 11 14209004 14210056 PCT