Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00764 ATGCAAGTGGAACCTGCAATTGAAATATATGGAGCTTCTACTTCTAGAAGATCCCAATTATCATCATCCTCTTCCTTCTTGACGTGTTTGGGGCTTGTGGTGGTGGTGGAGGGGCTTGAGGGAAATGACGTCGTCAGAGCCCACCGCCACTCCACCTTCAAAACGGGCCTCAGGCCCACCCCCACCTTCGTCCCTTCCATCGTCGCCACGCCCAATTCCTCCCTCCTTAGTGAAGAAGCCTTCAAAGGACTAAGCCAAGGCTTCGACCCAAACGACCACGACTTCGACCAAAATTCCCATTCCGAAACTGCCAAGCCCGACAAACTCGACATTTCCAAGCTCCACTTGCCCACGCACCTTGTCAAAACCCTCCGCACCCGAGGGATTACGCACCTTTTCCCTATTCAGAGAGCTGTGTTAGTACCTGCACTTGAAGGCAGAGATATCATTGCTCGAGCCAAGACCAGCACCGGTAAAACATTGGCGTTCGGGATTCCAATTATTAAAGGCCTCACTGAAGATGAACTTGCACCTTCTCACAGGCGGTCTAGTAAGCTTCCGAGAGCTTTGGTGCTTGCGCCTACAAGGGAGTTGGCCAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCGCCTTATCTCAACACTGTTTGTGTCTACGAGGGTGTTTCTTATGTTACCCAGCAGAGTGCACTTTCACGTGGTGTGGACGTGGTGGTTGGGACTCCAGGGAGAATAATTGACTTGATAAATGGGAACAGTCTTAAGCTAGATGAAGCAGCCAAGGAAACAACTACCACGAATGTTGTTGGGGAAAATTTAGGAAACTGTTCGGAGGATTTACTTGCGGCTAGAGATCTTGATTAA 864 0.4977 MQVEPAIEIYGASTSRRSQLSSSSSFLTCLGLVVVVEGLEGNDVVRAHRHSTFKTGLRPTPTFVPSIVATPNSSLLSEEAFKGLSQGFDPNDHDFDQNSHSETAKPDKLDISKLHLPTHLVKTLRTRGITHLFPIQRAVLVPALEGRDIIARAKTSTGKTLAFGIPIIKGLTEDELAPSHRRSSKLPRALVLAPTRELAKQVEKEIKESAPYLNTVCVYEGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLDEAAKETTTTNVVGENLGNCSEDLLAARDLD 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00764 287 CDD DEADc 120 259 - -
Cca11g00764 287 Pfam DEAD/DEAH box helicase 133 257 IPR011545 GO:0003676|GO:0005524
Cca11g00764 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 257 IPR027417 -
Cca11g00764 287 SMART ultradead3 128 287 IPR014001 -
Cca11g00764 287 Gene3D - 85 267 IPR027417 -
Cca11g00764 287 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 49 258 - -
Cca11g00764 287 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 259 IPR014001 -
Cca11g00764 287 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 3, CHLOROPLASTIC ISOFORM X1 49 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00764 Cca-Chr11 13967630 13970422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00764 63 257 Eukaryotic Initiation Factors Gene Family AT1G72730 31.313 8.06e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00764 - K16911 ccaj:109792645 446.817