Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00759 ATGGAGAGATCAGagaagaagtggaagaaggaggaagtgaaagagaagaagaagaaCAGAAAGGTGGATCTAACGATGATGTTGGGAACCTTGAAGGGGTGCGAGGAGGAGGTGGTGATGGCGTCGCCCAGGGACGTGTTTGGGGTGGCCATTTCCGGGACGGATTCGGACAGCACGGGGAGCTGCGCCTACAGCGGGCCTCTGTCGCCGGGAATGGGCCAGAGGCAGTGGAGGGCCATGATCGACGTGCTGAGGTTCAAGTCCGTTAGAAGATTCTCGAGCATTCCGCTGCTTGCGGCCAGCTACGAGATCTCTCGGAGGAGCCTCAGGAACAAGTTGGCGCGTATTCGACCCGCCAATgaagacgacgacgacgacgaTTTCGATTGCGCCATTGTTATTGATGACATTCCCACCAAGCCTTCTTGGAGGAACTTCAGTTACTCTGACCTTGCTGCTGCAACCCAAGATTTCAATCCTGAGAACATGATTGGAAAGGGTGGTCATGCTGAAGTCTACAAAGGACGCTTACCAGATGGTCAAGTTGTAGCAGTAAAGAGGATAATGAGGAACGACAAGGAAGTTGAGGACAGAGCTGGGGATTTTTTGTCAGAGCTTGGAATCATTGCTCACATTAACCACCCTAATGCAACACACATGATTGGGTTTGGGATTGACCGTGGCCTATTCTTTGTTCTTGAATTCGCCCCACATGGAAGCCTTGCCTCTTTGCTCTTTGGTAGTTCTGAATGTTTAGAGTGGAAGATAAGGTTTAAAGTAGCTGTTGGGGTAGCAAAAGGATTGAAGTACCTCCACCACGATTGCCCGAGAAGAATCATTCACAGGGACATCAAAGCTTCAAACATACTACTCAACAACAATGATGAAGCTGAGATTTCAGATTTTGGATTGGCAAAGTGGCTCCCAGATAAGTGGGCTCACCATGTTGTGTACCCAATAGAAGGCACATTCGGGTATTTAGCTCCGGAGTACTTTATGCATGGAATTGTGGATGAGAAGACTGATGTTTTTGCATTTGGGGTTTTGTTACTCGAGCTCATAACTGGTCGTCGTGCAGCCAAACCACTGCTGGATGCAAAATTGATCAAAGAAATGGCAGACCCCAGATTGGAAGAGAATTATGATCCCACAGAAATGAAGTGTGCCATGGCAACGGCTTCCATGTGTATCCACCACATGCCCTCTAAGAGGCCGTACATGAATCAGGTTTTACAGCTACTGAAAGGCGAAGAGGTGTCTATTGAACTCAATCAAAACTCAAATGCTCCAAGATCACTTTTGTTAGATGCATGTGACCTGGAAGATTACACTTGCTCTAATTATTTGAACGACATCAATCGCCACAAGCAGTTAATCATGGAGTGA 1386 0.4553 MERSEKKWKKEEVKEKKKNRKVDLTMMLGTLKGCEEEVVMASPRDVFGVAISGTDSDSTGSCAYSGPLSPGMGQRQWRAMIDVLRFKSVRRFSSIPLLAASYEISRRSLRNKLARIRPANEDDDDDDFDCAIVIDDIPTKPSWRNFSYSDLAAATQDFNPENMIGKGGHAEVYKGRLPDGQVVAVKRIMRNDKEVEDRAGDFLSELGIIAHINHPNATHMIGFGIDRGLFFVLEFAPHGSLASLLFGSSECLEWKIRFKVAVGVAKGLKYLHHDCPRRIIHRDIKASNILLNNNDEAEISDFGLAKWLPDKWAHHVVYPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAAKPLLDAKLIKEMADPRLEENYDPTEMKCAMATASMCIHHMPSKRPYMNQVLQLLKGEEVSIELNQNSNAPRSLLLDACDLEDYTCSNYLNDINRHKQLIME 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00759 461 ProSiteProfiles Protein kinase domain profile. 158 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00759 461 PANTHER OS08G0249100 PROTEIN 1 461 - -
Cca11g00759 461 Gene3D Phosphorylase Kinase; domain 1 133 235 - -
Cca11g00759 461 Pfam Protein tyrosine and serine/threonine kinase 161 413 IPR001245 GO:0004672|GO:0006468
Cca11g00759 461 SUPERFAMILY Protein kinase-like (PK-like) 143 432 IPR011009 -
Cca11g00759 461 SMART serkin_6 158 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00759 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Cca11g00759 461 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 1 461 - -
Cca11g00759 461 ProSitePatterns Protein kinases ATP-binding region signature. 164 186 IPR017441 GO:0005524
Cca11g00759 461 Gene3D Transferase(Phosphotransferase) domain 1 237 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00759 Cca-Chr11 13844439 13848727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00759 146 410 Trihelix Transcription Factor Family AT1G68690 43.007 2.73e-63 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca11g00759 PK_Tyr_Ser-Thr 9.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00759 - - gmx:100812793 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00899 06 22491474 22495653 Cca11g00759 11 13844439 13848727 PCT