Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00756 ATGGCTGGTGCCACAAATTGGCTTACGTTTTCGTTGACTCCCATCGACTCGCACTTTGTTCCATTCGACACTTCCTCTCAATGCTTCGTCGATAACTTTTATGGGTGCACAAGTTCCAAGGGCGTGATGGAGTCGCAGAGTGGAAACCAAGCACTTGTGGTGCCGAAAGTGGAAGATTTTTTCGAGAGCCAAACGGAGACTCAGGAGAATTCCTCGCTGACTCATGTTTACGACCACGGTTCTGCCTCGGCTTACTTCAGTGACCTGCAAGATCTGAACGCGATTCCTGGCCTTCAAGCGTTCCCCGAGTTGGATGACTCAGCCTACGACAGGACCCGGGTTGCACCCACCGAGTTGTCATACAAAGGAGGTTTGTCTCTGTGTGTCGCGGCGCACGGTTCTGATTCTGAGGTTAAGGCCATCGTGGCCGTGGAAAATGATACCCACAAGAAGGTGCTTCCGAATAACTTGGGTGGCCAGCGAACTTCTATATACAGAGGGGTCACAAGACACCGATGGACGGGTAGATACGAAGCGCATCTGTGGGATAACAGCTGTAGACGCGAGGGTCAGGCCAGGAAAGGGCGTCAAGTGTACTTGGGTGGATATGACAAGGAAGAAAAAGCTGCGAGAGCTTATGACTTAGCAGCTATAAAGTACTGGGGACCAACAGCTACCACCAACTTTCCTATTGCCAATTATACAAAGGAACTGGAGGAGATGAAACATGCAGGGAAGCAAGAATTTATTGCATCACTTCGGAGGAAAAGTAGTGGTTTTTCAAGGGGAGCTTCTGCTTACAGGGGTGTTACCAGGCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCAGGAAACAAGGATCTGTACTTGGGAACATTTGCAACTGAAGAGGAGGCAGCAGAGGCATATGACATTGCAGCCATCAAGTTCAGAGGTTCAAGCGCGGTGACCAACTTTGAGATGAGCAGATATGACGTGGAAGCTATACTGAATAGCTCTCTTCCAGTTGGTGGGGTAGCAAAACGCTTGAAGCTTTCCCCAGAATCTGAGACCAAAGCTCCTATAAATAGCAGCACTCAACAACCTGAGGTCACAAACGTGAGTAGCAGCATCAATTTCTCAAACATTCAGCCACTTGCTTCTATACCCTTTGACCCTGCACACACATGCTACCCTCACAACCTCTTCCACCAGTTTCACCCCACCAATGGTGCAAGTAGCACCGCTGAGTCTTCTGCAACTGTGACCAATGCAAATGcaacaacactcactaccctaccaccaccaccaccacTTCCTGGGTTCTTTATATGGCCTCATCACCAGTCCTATAATTGA 1350 0.4785 MAGATNWLTFSLTPIDSHFVPFDTSSQCFVDNFYGCTSSKGVMESQSGNQALVVPKVEDFFESQTETQENSSLTHVYDHGSASAYFSDLQDLNAIPGLQAFPELDDSAYDRTRVAPTELSYKGGLSLCVAAHGSDSEVKAIVAVENDTHKKVLPNNLGGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAAIKYWGPTATTNFPIANYTKELEEMKHAGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGSSAVTNFEMSRYDVEAILNSSLPVGGVAKRLKLSPESETKAPINSSTQQPEVTNVSSSINFSNIQPLASIPFDPAHTCYPHNLFHQFHPTNGASSTAESSATVTNANATTLTTLPPPPPLPGFFIWPHHQSYN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00756 449 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 444 - -
Cca11g00756 449 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Cca11g00756 449 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Cca11g00756 449 SMART rav1_2 164 236 IPR001471 GO:0003700|GO:0006355
Cca11g00756 449 SMART rav1_2 266 330 IPR001471 GO:0003700|GO:0006355
Cca11g00756 449 ProSiteProfiles AP2/ERF domain profile. 164 230 IPR001471 GO:0003700|GO:0006355
Cca11g00756 449 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 53 444 - -
Cca11g00756 449 Pfam AP2 domain 266 316 IPR001471 GO:0003700|GO:0006355
Cca11g00756 449 Pfam AP2 domain 164 222 IPR001471 GO:0003700|GO:0006355
Cca11g00756 449 SUPERFAMILY DNA-binding domain 163 231 IPR016177 GO:0003677
Cca11g00756 449 SUPERFAMILY DNA-binding domain 265 326 IPR016177 GO:0003677
Cca11g00756 449 CDD AP2 163 232 IPR001471 GO:0003700|GO:0006355
Cca11g00756 449 Gene3D AP2/ERF domain 266 326 IPR036955 GO:0003700|GO:0006355
Cca11g00756 449 Gene3D AP2/ERF domain 164 232 IPR036955 GO:0003700|GO:0006355
Cca11g00756 449 ProSiteProfiles AP2/ERF domain profile. 266 324 IPR001471 GO:0003700|GO:0006355
Cca11g00756 449 CDD AP2 265 326 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00756 Cca-Chr11 13769736 13774903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00756 54 448 AP2-EREBP Transcription Factor Family AT5G10510 51.282 4.07e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Cca11g00756 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00756 K09285 - gmx:100795280 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00897 06 22480701 22486092 Cca11g00756 11 13769736 13774903 PCT