Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00755 ATGGATGCAACTCAAACAGAAAAAATTTACGTTGCTGTTGGCTATGATATCATAGATGGATTTCAAACTTTGAGATGGGCTATAAACAAATGGAATTCCCATCCATGTTCTATAGTCATTCTACATGTGAAATACAACACTACCATGAAATATGTTGCCACACTGCTTGGCAGACTCCCTGCAAGAGGCGCATGTGAAAAGAAGCTGGAACGTGTCAGAAAATATGAACAAAGGATAATTGAGAAGCTTCTTTCCAAGTATATAGCTTTATGTGACAATGTGCCAGCTGAAACATTTGAAGTTGAGAAATTTGATGAACCAATGCAAAAGCGCACCGTAGACTTGATCCATGGTCTAGGAATAACGAAATTGGTCATGGGATTTTCATTCATGAAGCCTTCCTTGAAATCGGAAGTTGACATTAATGGATTTTTCTACGTTCATCATCTCAAGCCTGCGTCCTGTGAGTTGTTCATTATTTGTGGAGGGAAACAAGTTATGCCACGAGTGAAGAATGATGGGATAATCTTGGAGGATGATAATGGGGTCAAAATAGCTAGCATGAGGGATAAGTTAAATTTTAAAGATTGGCTAGAGAGAATGTTATTTGATAATAAAACAATTGACTCCCAACATAGAAGTTCTTGCGTACAAACAACTTCCTCATCAAATTTGGAATTGGAGTCCTATCTTAACCAGAATCAATGGGAAATTAGTTTCCAAGAAATTGAAAATTATTTACAAGAGTTACTATCTTTGAATTTGGAGGAAGGGCAAGACGACCATGTTTCTCACACTAGCCCAATTGAGCCATATGTCAAAGAACTTAACAATTTGGATAGAAAGAGTGCTGCAGAAAATATTGAGATCCTCAAAGATAAACTGAATGAAGCTTACAGAACCATCCAAATGAAAAGGAAAGAAGACGAGGCCAATTGGGAGAGACATGAGAAAGCTGAATGGGCTATTTATTTATGTAATCGTCGGgaagaagaactagaatctctaataaaggaagaagcaagaagaaaggaagaagtaaagaaggaactggaggcagaaaaagaagaagTTAACGAAATTAGAATGGATATTAAAGAGAGCAAGGAAATGCTTAGTTCAGTGGCAGAGCAGCAATCAGAGCTCGTAAACAGGCTTCACATTTGCACATTGGCAATGTCACAAGCTGAAAGCGAACTAGGGAAGGCAATGGCTGAGAAGAATGAGATGCTTATGGAAATGAATGATCTGAGGAGACAAAGAGAAGGGTTGAACAGAAGAATTCAGTTTTATCAAAGAAAAAGATGTCACAGGAATGAGTGTAGGATGATAGAAAAGGGTTGTGGTTTCAGAGAGTACACGAAAGAAGAGATCATCATAGCCACCCACAATTTTTCAGAGCAAAAGAGGTTGAAATCTGGTGGGAATTGGAGCAGTGTGTACAGAGGACAAATTAACCATTCCACTGTTGCAATCAAGAAGCTCAATTTTGCTTCAGATTTGTCACAACTAGAGTTCCAAGCCAAGGTGGCATATCTTGGTAGGATTCGGCAACCTCATCTAGCTGCTGTGTTGGGCTTCTGCTCAGAGCCCAAATGCTTAGTTTTGGAATACATGAACAGAGGTAGCTTGGAGGAAATGCTATTCGGCATGAACAGAAGCCGTGTCTTAACCTGGCGTGATCGCGTAAGGATAGCCATTGAAGTTTGTTCTGGGCTGGGCTTTCTAAATGCAGCCCAGCCCAGGCCCATTATCCATTGCCTTCCTTCTCCATCCAAAATCCTCCTAGACTGCAACCTTGTTGCAAAAATCACAGGGTTTGGGCTTGAAGGGTGCAGTGAAGAATGCAACGATGATTCAGAAATGAAAGCAATAGGGGTTTTATTGCAAAACTTATTGACTGGAAGAAGAAATTGGGTGACAATGGATACTGATAGTGAGGCTTTTTATGATGAGATTGGTGAGCAATGGCCGTTGGATGTAGCAAGAGAAGTGGTGGGCTTAGCAATGAGGTGTATGTCCATAGAGTGTGGGCCCAATGGAGAAATGAGCATAACAAGAGTGATGGAAGAACTGAATGAGATTATGAGAAAGGGTGATGAAAAGGTTGCTAGGGATAGATGGAATGGTCATGTGGATGCACATGACTCCACCCACGTGCCTAGTTTCTTCGTTTGCCCTATCCTTAAGAAGATAATGAAAAATCCACATATAGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAAAAGTGGTTGCAATCGGGGCATGAAATATCACCAAAAAATTTGAGGCTGAACCACAAATTACTTACCCCTAATCATACCCTCCGTTCCCTGATTGAAGACTGGCAAACCAAGACATCATCAGCTACACTTGCAAATTAA 2391 0.3902 MDATQTEKIYVAVGYDIIDGFQTLRWAINKWNSHPCSIVILHVKYNTTMKYVATLLGRLPARGACEKKLERVRKYEQRIIEKLLSKYIALCDNVPAETFEVEKFDEPMQKRTVDLIHGLGITKLVMGFSFMKPSLKSEVDINGFFYVHHLKPASCELFIICGGKQVMPRVKNDGIILEDDNGVKIASMRDKLNFKDWLERMLFDNKTIDSQHRSSCVQTTSSSNLELESYLNQNQWEISFQEIENYLQELLSLNLEEGQDDHVSHTSPIEPYVKELNNLDRKSAAENIEILKDKLNEAYRTIQMKRKEDEANWERHEKAEWAIYLCNRREEELESLIKEEARRKEEVKKELEAEKEEVNEIRMDIKESKEMLSSVAEQQSELVNRLHICTLAMSQAESELGKAMAEKNEMLMEMNDLRRQREGLNRRIQFYQRKRCHRNECRMIEKGCGFREYTKEEIIIATHNFSEQKRLKSGGNWSSVYRGQINHSTVAIKKLNFASDLSQLEFQAKVAYLGRIRQPHLAAVLGFCSEPKCLVLEYMNRGSLEEMLFGMNRSRVLTWRDRVRIAIEVCSGLGFLNAAQPRPIIHCLPSPSKILLDCNLVAKITGFGLEGCSEECNDDSEMKAIGVLLQNLLTGRRNWVTMDTDSEAFYDEIGEQWPLDVAREVVGLAMRCMSIECGPNGEMSITRVMEELNEIMRKGDEKVARDRWNGHVDAHDSTHVPSFFVCPILKKIMKNPHIAADGFSYELEAIEKWLQSGHEISPKNLRLNHKLLTPNHTLRSLIEDWQTKTSSATLAN 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00755 796 Coils Coil 393 434 - -
Cca11g00755 796 Pfam Protein tyrosine and serine/threonine kinase 474 612 IPR001245 GO:0004672|GO:0006468
Cca11g00755 796 CDD RING-Ubox_WDSUB1_like 724 762 - -
Cca11g00755 796 Coils Coil 281 312 - -
Cca11g00755 796 Pfam U-box domain 720 788 IPR003613 GO:0004842|GO:0016567
Cca11g00755 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 718 793 IPR013083 -
Cca11g00755 796 ProSiteProfiles Protein kinase domain profile. 466 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00755 796 PANTHER OS02G0152300 PROTEIN 4 790 - -
Cca11g00755 796 Gene3D Phosphorylase Kinase; domain 1 450 538 - -
Cca11g00755 796 Gene3D Transferase(Phosphotransferase) domain 1 539 625 - -
Cca11g00755 796 PANTHER U-BOX KINASE FAMILY PROTEIN 4 790 - -
Cca11g00755 796 SUPERFAMILY RING/U-box 717 790 - -
Cca11g00755 796 SUPERFAMILY Protein kinase-like (PK-like) 448 675 IPR011009 -
Cca11g00755 796 SMART Ubox_2 723 785 IPR003613 GO:0004842|GO:0016567
Cca11g00755 796 ProSiteProfiles U-box domain profile. 719 792 IPR003613 GO:0004842|GO:0016567
Cca11g00755 796 Coils Coil 330 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00755 Cca-Chr11 13713952 13721141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00755 3 791 U-box Gene Family AT5G65500 42.910 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca11g00755 PK_Tyr_Ser-Thr 6.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00755 - - ccaj:109800404 1561.2