Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00743 ATGGCTAGTGATTTTCCTTCACATGTTCAATCATCCCAACTTGAACACGAACATGAACATCCTAATTCCCACATTCTGGCGAATGTTTCCGACCACAAAATCTTTCATGCATCCTCGTACAATCCGTTTCCGAGCCCCACCTGCATCCATGACGCGATGCAATCATGGGCATGCAAAACCGAAGCGCCCGCGGAAGCGCGTGAGGTGCACGCGCCTCCGATGTGGAAGCGCTTCCGGGGCGTGAGGCGGAGGCCGTGGGGGAAGTTCGCGGCGGAGATATGGGATCCGAGGAGGAAGAGTGGAAGGGTTTGGCTTGGGACATATGAGACTGAGGAAGAAGCTCTGGTTTGGCTTATGATAGAGCTGCTTTTAAGATGCGTGGTAGCAAAGCAAAGTTGA 399 0.5288 MASDFPSHVQSSQLEHEHEHPNSHILANVSDHKIFHASSYNPFPSPTCIHDAMQSWACKTEAPAEAREVHAPPMWKRFRGVRRRPWGKFAAEIWDPRRKSGRVWLGTYETEEEALVWLMIELLLRCVVAKQS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00743 132 MobiDBLite consensus disorder prediction 1 21 - -
Cca11g00743 132 SUPERFAMILY DNA-binding domain 77 116 IPR016177 GO:0003677
Cca11g00743 132 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Cca11g00743 132 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Cca11g00743 132 CDD AP2 76 114 IPR001471 GO:0003700|GO:0006355
Cca11g00743 132 Pfam AP2 domain 77 114 IPR001471 GO:0003700|GO:0006355
Cca11g00743 132 SMART rav1_2 77 125 IPR001471 GO:0003700|GO:0006355
Cca11g00743 132 ProSiteProfiles AP2/ERF domain profile. 77 114 IPR001471 GO:0003700|GO:0006355
Cca11g00743 132 Gene3D AP2/ERF domain 76 118 IPR036955 GO:0003700|GO:0006355
Cca11g00743 132 PANTHER ETHYLENE RESPONSE FACTOR 37 114 - -
Cca11g00743 132 PANTHER DNA-BINDING DOMAIN 37 114 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00743 Cca-Chr11 13261174 13261640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00743 77 114 AP2-EREBP Transcription Factor Family AT3G23230 78.947 5.29e-16 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca11g00743 AP2 3.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00743 K09286 - gmx:100792115 144.05