Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00733 ATGGATTCAAAAAATGTGTCAAACATGAATGTTGTTGTTAAGAAGACAAAGGGTCGGCAAAAGATTGAGATGAAAAAGATAAGCAACGAGCGGAACCTTCACGTGACGTTCTCTAAGCGTCGCAATGGTATTTTTAAGAAAGCGAGTGAGCTTGCAACCCTTTGCGGCGTGGACCTTGCTGTTATCGTGTTCTCACCTGGTCAACGAGTTTTCTCCTTTGGCACCCCTAGTGTTGATTCTGTCATCCAACGCTACACGGGGCAAGCCCCACCTCCCCTCCTTAACTTAGACCTCAACGAGGCCCACCTCACCGTGGACGAGCGCGAGCTCCACGCACACCTTGGTTACCTATCCAACCAGATTACTATAGAGAAAAAGCGTGATGAAGAATTGAATCATTTGCTGAAGACTGCAAAGAATAACTTTTGGTGGGCCACCCCAATTGAAAGAATGGACAAAACCCAACTTGAGAAGTTCAAGACTGCATTGCTGGATTTGAAGACACATATTAATTTGAAAAAACAAAAGCTCCTGAATGAGAGCACTTATATCTCTCCTCACATTTTTGCAGGTGGAAGCTCTTCCTCCAATGTTAATAACAATGCGACTGTGCTTCCACAACCATTGTTGAGGAACCTTGTGATTGATGGGAGCATCACTAGCCACCAACAATTTAATAAGAACTTAGATGGACATGAACATGGACCTGGACCTACTTTTAGGTTCTTTTGA 732 0.4399 MDSKNVSNMNVVVKKTKGRQKIEMKKISNERNLHVTFSKRRNGIFKKASELATLCGVDLAVIVFSPGQRVFSFGTPSVDSVIQRYTGQAPPPLLNLDLNEAHLTVDERELHAHLGYLSNQITIEKKRDEELNHLLKTAKNNFWWATPIERMDKTQLEKFKTALLDLKTHINLKKQKLLNESTYISPHIFAGGSSSSNVNNNATVLPQPLLRNLVIDGSITSHQQFNKNLDGHEHGPGPTFRFF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00733 243 PANTHER MADS BOX PROTEIN 17 177 - -
Cca11g00733 243 SUPERFAMILY SRF-like 18 97 IPR036879 GO:0003677|GO:0046983
Cca11g00733 243 CDD MADS_MEF2_like 18 85 IPR033896 GO:0000977|GO:0045944
Cca11g00733 243 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Cca11g00733 243 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Cca11g00733 243 Gene3D - 29 93 IPR036879 GO:0003677|GO:0046983
Cca11g00733 243 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Cca11g00733 243 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Cca11g00733 243 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Cca11g00733 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 17 177 - -
Cca11g00733 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00733 Cca-Chr11 12919428 12920229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00733 12 196 Type I MADS-box Gene Family AT5G60440 45.503 1.81e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca11g00733 SRF-TF 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00733 - - ccaj:109815930 373.629