Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00730 ATGGAATTCGAGGAGCAAGAGGAAACTGAGCTGGCGATGGCCGCAGCGAGTTACGAAGACTCGGCCTTCCACCCGGGCAGAGTGAAAGTGCCGAGTCACGGCGAGGAGGAGCCCGTGACGGCGGTGACCCCGAGCCCACCCATGGCCCGCAACAGCGGCAAGGGGAGGTACAAGGAGTGCCTCAAGAACCACGCGGTGGGGATCGGAGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGGCGGCGGGCTCGGAGGGCACTCTGGACGCTCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGGGCGGTGAGGGCCCGTACCTAATGCCTTTCCAGCAGCGCCGCCACCAGCCGCCGCACTTCTCGGCGTACTACCGTGCGCCGGCGGGGTACCTGCACGTGGCGGGTCAGCAGCAGCGTGGTGGGCCCGCCACGCTGGCGCTCCCGTCCACGTCAGGTGCTGGCGGTGGGGCCCAGAGCCCGAGGGAGGACCAGGAGGATGTTTCGGACCCATGTGGCGGTGGTGGGCCCAAGAAGAGGTTCAGGACCAAGTTCACCCAGGAGCAGAAGGACAAGATGCTGGGCTTCGCTGAGAAATTGGGCTGGAGGATTCAGAAGCACGACGAGAACGTCGTTCAGGAGTTCTGCTCCGAAACTGGCGTTCAGCGTCACGTGCTTAAGGTTTGGATGCATAACAACAAGCACACCCTTGGTAAGAAGCCCTAG 741 0.6424 MEFEEQEETELAMAAASYEDSAFHPGRVKVPSHGEEEPVTAVTPSPPMARNSGKGRYKECLKNHAVGIGGHALDGCGEFMAAGSEGTLDALKCAACNCHRNFHRKEGGEGPYLMPFQQRRHQPPHFSAYYRAPAGYLHVAGQQQRGGPATLALPSTSGAGGGAQSPREDQEDVSDPCGGGGPKKRFRTKFTQEQKDKMLGFAEKLGWRIQKHDENVVQEFCSETGVQRHVLKVWMHNNKHTLGKKP 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00730 246 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 183 239 IPR006455 -
Cca11g00730 246 MobiDBLite consensus disorder prediction 142 186 - -
Cca11g00730 246 MobiDBLite consensus disorder prediction 1 53 - -
Cca11g00730 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 44 245 - -
Cca11g00730 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 245 - -
Cca11g00730 246 Pfam ZF-HD protein dimerisation region 56 106 IPR006456 -
Cca11g00730 246 Gene3D - 168 244 - -
Cca11g00730 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 106 IPR006456 -
Cca11g00730 246 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 56 106 IPR006456 -
Cca11g00730 246 SUPERFAMILY Homeodomain-like 173 244 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00730 Cca-Chr11 12813524 12814846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00730 53 242 ZF-HD Transcription Factor Family AT4G24660 55.670 1.81e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca11g00730 ZF-HD_dimer 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00730 - - gmx:100798992 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00873 06 22029590 22030964 Cca11g00730 11 12813524 12814846 PCT