Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00724 ATGGAAGATGCACTGCGCCGTCTCAACGGAATGACCCCCATTCAAGAACCCGACGCCGTCGCCGACCACCCGCACCCCAAGAAGTCCGCCGCCAAGCGCACTGTGCGCGAGGCTCCCACCTCCGGCACTGCCATGCGCTACCGCGGCGTCCGACGCCGCCCCTGGGGCCGCTACGCCGCCGAGATTCGCGACCCGCAGTCGAAGGAGCGCCGCTGGCTGGGCACCTTCGACACGGCAGAGGAGGCCGCCTGCGCCTACGACTGCGCCGCCCGTGCCATGCGCGGCGTCAAGGCCCGCACCAACTTCGTGTACCCCGACGCTCCAGACCCTCACCTCTTCCAACCCTACAATGTTCCTAAGCACTGCCACGTCACCAGGTTCGTCCCGAACCACAGCCTCGGAGGTGCCGACTTCtcatcatcatcatcctccactcatcacaatcaCAACCCTTCTTCTCTCAACATGCTTCTCTTTCGTGACTTCCTCAACTCTTCTTCTTCTCAGCATTTTCATAGTAAGACTGCGCTTGCGCCTGCTAGTAGCTATGTAAACTCTTCTTCGTTACCTTCTCCAACGGGTAACTATGCTAATAACATTGCTGGTAACTCCGGTGTTGTTAGCTTCAATCACGCAACAGAAGTTGCTGAGTCTATTGATGAAGACTTGGGGTTGGGTTTTTTCCCGCGAGAGTCTTCTGATTCTGGGTTATTGGAAGAGATAGTCCATAAGTTCTTGCCAAAAACCAAGCCCAATAAGACTGGTGAAACTTCGCTGAGACATGAGACTTTGTCCATTTCTGAACCATTTCCTCAAACTGTGTCTGATTACGTGGCTGTTTCTGCTACTAAGGGTTATGGTGATGCCAAAATGAGGTTTCCTAAAATCGATGGTTTTGGTGTGTCTTATGATTCTCCCATGCAGCAATTTGATACCCTTAATGGGTTTAACCCCGTGCAGGGTGTGACTATTGAGAGAGACAACAACAGCAACAACTACCAGTATATGATGAATCATTTCCCAGGATGTTCCAACTTGGAAGACATTCTTCAGTATCCAGAACTTTTTAATTCCTTTGCAGCCAGGATGCAGAATGCTTAA 1101 0.5086 MEDALRRLNGMTPIQEPDAVADHPHPKKSAAKRTVREAPTSGTAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGVKARTNFVYPDAPDPHLFQPYNVPKHCHVTRFVPNHSLGGADFSSSSSSTHHNHNPSSLNMLLFRDFLNSSSSQHFHSKTALAPASSYVNSSSLPSPTGNYANNIAGNSGVVSFNHATEVAESIDEDLGLGFFPRESSDSGLLEEIVHKFLPKTKPNKTGETSLRHETLSISEPFPQTVSDYVAVSATKGYGDAKMRFPKIDGFGVSYDSPMQQFDTLNGFNPVQGVTIERDNNSNNYQYMMNHFPGCSNLEDILQYPELFNSFAARMQNA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00724 366 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Cca11g00724 366 MobiDBLite consensus disorder prediction 1 41 - -
Cca11g00724 366 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
Cca11g00724 366 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Cca11g00724 366 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Cca11g00724 366 MobiDBLite consensus disorder prediction 20 34 - -
Cca11g00724 366 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Cca11g00724 366 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Cca11g00724 366 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Cca11g00724 366 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 366 - -
Cca11g00724 366 CDD AP2 46 102 IPR001471 GO:0003700|GO:0006355
Cca11g00724 366 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00724 Cca-Chr11 12520039 12521323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00724 1 248 AP2-EREBP Transcription Factor Family AT1G24590 38.406 9.00e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca11g00724 AP2 6.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00724 - - gmx:102661952 396.741