Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00722 ATGGCTTCAACCATCCTTTCCCCAAATGCTTCTCCTGTTGCAGTGCCTCCAGCACTTGGTGGTGTTTTATCATCACCACCTCCTTCTTCATCTTCTCCAACAAATTCTTCCACTCCACCATCACCTCCCAATTCTCCTCAGCCTAATCAAACATCCAATTCCCCTGCTCCATCATCTCCACCTCCTTCTCCTCCTCAGGCAGTGCCTGTAACCCCTCCCCCTTCCCCATCACTCTCTcctccaccaccatccactacaccaccaccatctttgccccctccttcaccacctgattctccaccaccattgccaccagcatctccaactccaccagtttcaacgtctcccccctcaccaccagccatcactgcccctcctccaGCTGAGACACCACCTTCCACTCCGAATTTGTCTCCACCAGCCGGTTCCCCTCCTCCTCAATTGCCTCCCACAACAATTCCACCACCCTCTAGACCCATTTCGCAGTCTCCTCCTCCAGCCAATGTTCCAAGGCCACCATCCACCACTCCCCCTCCACAGAAGGAGAATCCACCCAAAAGTAGTCCTTCACCTCCTTCACATGCATCCCCTCCATCAGTTTCTCAATCTCCTCCTAAACCTCCTTCCTCTGATGTTCCCCCTCCATCCACATTGCCATTAACTCCTCCTTCATTCCCTTCAACTCCGAATTCTTTACCTGATCCACCAACTAATGAAACCACGGCAGGGGGTCCAACCGTGTCACTGCCCTCTCTTCCAACTGAGAAACCTACTGCTAGACCAACTAATGATGGTACTAACAATATGGCTACAAACAACGCACCTTCACATTCAGGAGGGTTGAGTACTGGAGGATCTGTGGCTATTGGAATTGTAGTTGGTTTTGTTATCCTTAGTCTTCTTGTTATGGCTGTGTGGTTTGTACAGAAGAAAACGAAGAAGGATAAAGGATCTAGAGGTGGTTATGCTGCTCCTTCTCCATTTACCTCATCCCATAATTCAGGTACCTTATTCTTGAGGCCACAGTCTCCTGCCAACTTTGTAGGTAGCGGATCTGGTAGTGATTTTGTGTATTCGCCGTCAGAGCCGGGTGGTGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATCCAAGCTACAGATGGGTTTTCAGCACAAAATTTGTTGGGAGAAGGTGGATTTGGTTGTGTCTATAAAGGTTTGCTCATAGATGGAAGAGAAGTTGCTGTGAAACAGCTCAAAGTTGGTGGTGGACAAGGGGAACGTGAATTCAGGGCAGAAGTGGAGATTATTAGCCGTGTACACCATCGTCATCTAGTTTCGTTGGTTGGTTACTGTATATCTGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACAATACTCTTCATTACCATCTCCATGGTGAAAATAGACCAGTTCTGGATTGGTCTACTAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACCTGCATGAAGACTGCCATCCACGCATTATTCATCGAGATATCAAGTCATCAAACATCTTGCTTGATCTTAACTATGAAGCTCGAGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAACTGACTGAAAAGTCTGATGTATATTCCTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATCGGTGATGAGAGCTTGGTTGAATGG 1797 0.4268 MASTILSPNASPVAVPPALGGVLSSPPPSSSSPTNSSTPPSPPNSPQPNQTSNSPAPSSPPPSPPQAVPVTPPPSPSLSPPPPSTTPPPSLPPPSPPDSPPPLPPASPTPPVSTSPPSPPAITAPPPAETPPSTPNLSPPAGSPPPQLPPTTIPPPSRPISQSPPPANVPRPPSTTPPPQKENPPKSSPSPPSHASPPSVSQSPPKPPSSDVPPPSTLPLTPPSFPSTPNSLPDPPTNETTAGGPTVSLPSLPTEKPTARPTNDGTNNMATNNAPSHSGGLSTGGSVAIGIVVGFVILSLLVMAVWFVQKKTKKDKGSRGGYAAPSPFTSSHNSGTLFLRPQSPANFVGSGSGSDFVYSPSEPGGVSSSRSWFTYEELIQATDGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHGENRPVLDWSTRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEARVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEW 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00722 599 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 99 599 - -
Cca11g00722 599 CDD STKc_IRAK 391 599 - -
Cca11g00722 599 PRINTS Proline rich extensin signature 76 101 - -
Cca11g00722 599 PRINTS Proline rich extensin signature 33 49 - -
Cca11g00722 599 PRINTS Proline rich extensin signature 8 29 - -
Cca11g00722 599 PRINTS Proline rich extensin signature 52 69 - -
Cca11g00722 599 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 99 599 - -
Cca11g00722 599 Gene3D Transferase(Phosphotransferase) domain 1 461 599 - -
Cca11g00722 599 MobiDBLite consensus disorder prediction 32 233 - -
Cca11g00722 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Cca11g00722 599 MobiDBLite consensus disorder prediction 234 280 - -
Cca11g00722 599 MobiDBLite consensus disorder prediction 1 280 - -
Cca11g00722 599 ProSitePatterns Protein kinases ATP-binding region signature. 391 413 IPR017441 GO:0005524
Cca11g00722 599 Pfam Protein tyrosine and serine/threonine kinase 388 587 IPR001245 GO:0004672|GO:0006468
Cca11g00722 599 ProSiteProfiles Protein kinase domain profile. 385 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00722 599 SUPERFAMILY Protein kinase-like (PK-like) 363 590 IPR011009 -
Cca11g00722 599 SMART serkin_6 385 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00722 599 Gene3D Phosphorylase Kinase; domain 1 362 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00722 Cca-Chr11 12482282 12486638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00722 287 599 Trihelix Transcription Factor Family AT1G26150 68.790 3.95e-156 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca11g00722 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00722 - - ccaj:109790989 765.763