Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00710 ATGGTTTCATTCACTCAGCTTCTTTCTCTTCTTTTCCCTTTGATGGCTACCACTTCTGCCTTTGAGGTATCAATCAAAGCAACTTATTTGGCTCCTTTAAATTGCTCTGCTAAGATCAGGACATGTAAGGCCTCCCTCTACCACATAACCCAAAATCTCACAATTGAACAACTTGCCTCTTTTTACTCGGTTATTTCTTCCCAAATCACACCTATAATGTATGGCACCAAACAAGACTACCTCATCACGGTACCTTGTTCATGCAAAAACACTAGTGACCTTAGCGGATATTTCTATGACACAATCTACAAAGTGAAGCCAAATGACACTTTTGTGAATATTTCAAACTTGATTTTTAGTGGGCAAGCCTGGCCAGTTAATGATACATCGCAGTTGCATCCAGACGAGAATTTAAGAATATATATTCCATGTGGGTGTTTAGAAAGTGATTCTCAAATAGTTGTTACCTATACAGTTCAACCTAATGACACAACAACAATGATTGCTAATCTGCTAAACGCTACACTGGCTGGCATGCTGAGCATCAACAAAATTCTGGCTCCAAACCCTGAATTTATAGATGTTGGTTGGGTGCTATTTGTTCCCACAGAATCCAAAGGACTTATACCTAGTTCTACTAACAAAGATGAGAAGACATCCAAGTGGACAACACCAGTCATTGGCATCTTAGCGGGCATGACATTACTTTCAGTTATTATAACAATCATTCTCATTCTCAGAAGAAATAAAGTCAAACAAATCACCAGAGAAGATTTACAAATTATCTCGAGAAGATCGATTGCCAACAGAACTATTTCCTCAAAGTATAGCCTTCATAAGGAATATATGGAAGATGTAATTTCATTTGAATCAGAAAGACCAGTAATATATAACCTTGAGGAGATTGAAGAGGCTACACATAACTTTGATGAAACTCGAAAAATAGGAAGTGGTGGATACGGAAGTGTTTATTTTGGAATGTTAGAGAATAAGGAGGTTGCTGTGAAGAAGATGAGATCTAATAAATCTAAAGAGTTCTATGCAGAACTCAAAGTCTTGTGTAGGATCCACCATATCAACATTGTGGAGCTGTTGGGATATGCCAACGGAGAAGATGACTTGTATTTGGTGTATGAGTATGTTCCAAATGGATCTCTTAGTGATCATCTTCATGATCCATTACTGAAAGGGAACCAGCCTCTTTCTTGGAGTGCAAGAGTTCAAATTGCATTGGATGCTGCAAGAGGTCTTGAATATATACATGATTATACAAAGGCACGATATGTGCACCGTGATATAAAGACTAGCAATATTCTACTTGATGACAAGCTCAGAGCAAAGGTGGGAGATTTTGGACTTGCAAAGCTGGTAGATAGAACCAATGATGAAAGTTTTGTGGCAACAAGACTCGTAGGAACACCAGGCTACCTTCCCCCAGAATCTCTGAAGGAGCTTCAAGTGACCCCAAAAACCGATGTGTTTGCGTTTGGAGTGGTACTTTCAGAGCTGTTAACAGGGAAACGTGCACTATTTCGAGAAAGCCAAGAAGACATCAAAATGAAATCACTCATTACTGTTGTTAATAAAATATTCCAAGATGATGACCCAGAGACTGCTTTAGAAGATGCCATAGATAAGAATCTAGAAGCTAGTTATCCGATGGAAGATGTCTACAAGATGGCAGAAATAGCTGAATGGTGCTTGAAAGAGGATCCAATAGAAAGGCCTGAAATGAGGGATATCATTGGAACATTATCACAAATTGTGATGTCCTCCACAGAGTGGGAAGCATCCCTATGTGGCAACAGCGAGGTCTTTAGTGGATTGTATAGTGGAAGATGA 1842 0.3909 MVSFTQLLSLLFPLMATTSAFEVSIKATYLAPLNCSAKIRTCKASLYHITQNLTIEQLASFYSVISSQITPIMYGTKQDYLITVPCSCKNTSDLSGYFYDTIYKVKPNDTFVNISNLIFSGQAWPVNDTSQLHPDENLRIYIPCGCLESDSQIVVTYTVQPNDTTTMIANLLNATLAGMLSINKILAPNPEFIDVGWVLFVPTESKGLIPSSTNKDEKTSKWTTPVIGILAGMTLLSVIITIILILRRNKVKQITREDLQIISRRSIANRTISSKYSLHKEYMEDVISFESERPVIYNLEEIEEATHNFDETRKIGSGGYGSVYFGMLENKEVAVKKMRSNKSKEFYAELKVLCRIHHINIVELLGYANGEDDLYLVYEYVPNGSLSDHLHDPLLKGNQPLSWSARVQIALDAARGLEYIHDYTKARYVHRDIKTSNILLDDKLRAKVGDFGLAKLVDRTNDESFVATRLVGTPGYLPPESLKELQVTPKTDVFAFGVVLSELLTGKRALFRESQEDIKMKSLITVVNKIFQDDDPETALEDAIDKNLEASYPMEDVYKMAEIAEWCLKEDPIERPEMRDIIGTLSQIVMSSTEWEASLCGNSEVFSGLYSGR 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00710 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Cca11g00710 613 Gene3D Phosphorylase Kinase; domain 1 288 380 - -
Cca11g00710 613 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Cca11g00710 613 ProSiteProfiles Protein kinase domain profile. 309 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00710 613 SMART serkin_6 309 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00710 613 Pfam Protein kinase domain 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00710 613 SUPERFAMILY Protein kinase-like (PK-like) 292 585 IPR011009 -
Cca11g00710 613 Pfam LysM domain 157 202 IPR018392 -
Cca11g00710 613 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 15 613 IPR044812 GO:0019199|GO:0045087
Cca11g00710 613 Gene3D LysM domain 150 213 IPR036779 -
Cca11g00710 613 ProSiteProfiles LysM domain profile. 155 201 IPR018392 -
Cca11g00710 613 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 15 613 - -
Cca11g00710 613 Gene3D Transferase(Phosphotransferase) domain 1 381 602 - -
Cca11g00710 613 SUPERFAMILY LysM domain 155 202 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00710 Cca-Chr11 12143895 12157265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00710 289 613 Receptor kinase-like Gene Family AT1G51940 52.266 6.32e-117 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca11g00710 Pkinase 2.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00710 - - ccaj:109807310 1102.43