Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00700 ATGGATCTAGAACTCCCAGCTGCAGCTGTGAATGATCCTCAACAACAAAAGTTTGCTCTACCTGTGGATTCTGAACACAAGGCCACTGAGTTCAGATTATTCTCCATAGCGAAGCCCCACATGAGGGCTTTCCACCTATCATGGATCTCTTTCTTCTCATGCTTCGTGTCTAGCTTTGCTGCACCACCCCTCGTTCCCATAATCCGGGACAACCTCAACCTCACAGCCACTGACATAGGAAATGCTGGTGTGGCATCAGTCTCAGGTGCTGTCTTGGCAAGAGTTGCAATGGGAACAGCTTGTGACTTAGTTGGACCGCGCCTTGCTTCTGCATCACTCATCCTCCTCACAGCACCGTTTGTGTACTTCACATCCATCATCAACTCAGCCACCTCCTATCTCCTTGTCCGCTTCTTCACTGGCTTCTCCCTTGCCACCTTTGTGTCCACACAGTTCTGGATGAGCTCCATGTTTTCGCCTCCTGTCGTCGGCTCGGCGAACGGCTTCGCCGGGGGCTGGGGGAACCTCGGAGGAGGAGCAACACAACTCATCATGCCCCTTGTGTTCTCCCTCATCCGTGACATTGGTGCTGCACAATTCACAGCATGGAGGATCGCATTCTTTGTCCCTGCCATGTTCCAAATGCTCACAGCTTTTTCAATACTGATATTTGGCCAAGACATGCCTGATGGCAACTTCCACAGATTGAAGAAGTCAGGGGACAAACCCAAAGATGAATTCTCAAAGGTGTTGTATCATGGTGTTACAAACTATAGAGGGTGGATTCTAGCGTTGACTTATGGCTATTGCTTTGGGGTGGAGTTGACCATAGACAACATCATAGCTGAGTACTTCTATGACAGGTTTAATCTGAAACTCCACACTGCTGGAATCATTGCTGCAAGCTTTGGCTTGGCTAACATATTTTCTAGACCTGGTGGGGGTTATATATCAGATGTGATATCAAAGAGATTTGGCATGAGGGGAAGGTTATGGGCCTTGTGGCTGTGCCAAACCTTGGCTGGTGTGTTCTGCATAATCCTTGGATTGGTGGGGTCTTTAAGTGTATCTGTAGTTGTTATGCTCATATTCTCTGTGTTTGTCCAAGCTGCATGTGGAATGACCTTTGGGATTGTTCCGTTTGTCTCTAGAAGGTCATTAGGGGTCATATCTGGAATGACAGGAGGAGGAGGCAATGTGGGTGCAGTTTTGACCCAGCTAATTTTCTTCAAAGGATCCAGGTTTTCGAAAGAAAGGGGAATAACTCTAATGGGTGTCATGATTATACTATGCACTCTGCCAATATGCTTAATCTACTTTCCACAATGGGGTGGGATGTTTTCTGGTCCCTCATCCGAAAAGGTCACAGAAGAAGATTACTACATGGCTGAGTGGAACTCAAAGGAAAAGGATAAAGGCTCCCATCATGCAAGCCTGAAATTTGCTGACAACAGCAGAAGTGAAAGAGGCAGAAAACTGAACACATCAACCGAGCCTACTGAAGAAATCACACCCCCACATGTTTGA 1527 0.4722 MDLELPAAAVNDPQQQKFALPVDSEHKATEFRLFSIAKPHMRAFHLSWISFFSCFVSSFAAPPLVPIIRDNLNLTATDIGNAGVASVSGAVLARVAMGTACDLVGPRLASASLILLTAPFVYFTSIINSATSYLLVRFFTGFSLATFVSTQFWMSSMFSPPVVGSANGFAGGWGNLGGGATQLIMPLVFSLIRDIGAAQFTAWRIAFFVPAMFQMLTAFSILIFGQDMPDGNFHRLKKSGDKPKDEFSKVLYHGVTNYRGWILALTYGYCFGVELTIDNIIAEYFYDRFNLKLHTAGIIAASFGLANIFSRPGGGYISDVISKRFGMRGRLWALWLCQTLAGVFCIILGLVGSLSVSVVVMLIFSVFVQAACGMTFGIVPFVSRRSLGVISGMTGGGGNVGAVLTQLIFFKGSRFSKERGITLMGVMIILCTLPICLIYFPQWGGMFSGPSSEKVTEEDYYMAEWNSKEKDKGSHHASLKFADNSRSERGRKLNTSTEPTEEITPPHV 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00700 508 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 9 494 IPR044772 GO:0015112
Cca11g00700 508 SUPERFAMILY MFS general substrate transporter 33 439 IPR036259 -
Cca11g00700 508 MobiDBLite consensus disorder prediction 469 508 - -
Cca11g00700 508 Pfam Major Facilitator Superfamily 48 404 IPR011701 GO:0022857|GO:0055085
Cca11g00700 508 MobiDBLite consensus disorder prediction 469 496 - -
Cca11g00700 508 CDD MFS_NRT2_like 44 437 IPR044772 GO:0015112
Cca11g00700 508 Gene3D MFS general substrate transporter like domains 35 233 IPR036259 -
Cca11g00700 508 ProSiteProfiles Major facilitator superfamily (MFS) profile. 43 443 IPR020846 GO:0022857
Cca11g00700 508 PANTHER HIGH AFFINITY NITRATE TRANSPORTER-RELATED 9 494 - -
Cca11g00700 508 Gene3D MFS general substrate transporter like domains 245 444 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00700 Cca-Chr11 11890447 11893513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00700 16 499 Inorganic Solute Cotransporters AT1G12940 74.174 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00700 K02575 - gmx:100787888 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00700 11 11890447 11893513 Cca11g00700 11 11890447 11893513 ECH