Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00699 ATGATCAATCCTCACCTACCAACTTCCATGCCTTGTTTGCTCCTCCTCCTCTTCCTTTCTCTCTTGCCAGCTCCCTCACTTTCCGACCCACGAGCCCAGAAGGTGGCTCTCCTATGCACCAACCGAACCGTCTCCTCCCTCACGCGCCGCCAGGTTTTCGTGGCCAACTTCCTGGCCGCCATGGACGCCTTGACCCCCCTGACGCGGGCGCAGGGCCACGGCGGCGTCGTCAAGGGCTCCCAAAACGCCAGCGTTTACGCCCTGGGCGAGTGCATGAAGGACCTCTCCCCCTCCGACTGCGACGTCTGCCTGGCGCAGTGCAAGACGCAGCTGCTCTCCTGCCTCCCCTTCCAGAAAGGGACACGTGGCGGCTCCCTCTTCTTCGACGGCTGCTTCCTCCGGTACGACGACTACGACTTCTTCAACGAGACCCTCGGCGACCAGGACTCCGCGGTGTGCGGAACTAATGGTACTGTTGGTGGTGGCGTTTATAAGGCCAACGCTTTGGAGTTGGTTCGGAACCTGAGCGAGGTGGCGCCCCGAAACGATGGGTTTGTGGTGGGGTCGGTGGAGAGAAGGAACGTGAGTGTTTATGGGTTGGCTCAGTGCTGGGAGTTTGTGAATGGGAGTGCGTGCCGGAGATGTTTGGCTCATGCTGTTTCTCGGATTGCTTCCTGTGAAACGCAGGAAGCCAGGGCGTTGAATGCTGGTTGTTACTTGAGGTTTTCTGCGCGCAAGTTCTTCAACAATTCAACCGATCTTACAACACCTGCACATCATGGAAGACGAAGTCTAGCAAAAATTTTGGCTGCATCTTCTGCGGCCCTGGCTCTTCTGCTGGTTGTTGCAGCAGTTGTTTTCTTTGTAAGGAAGAATGTGGTGACAAGAAGAAGAGAAAGAAGACAGTTGGGTGCACTTCTGGACACAGTGAATAAGTCCAAGTTGAATGTGCCATATGAGATTCTCGAAAAGGCAACAAATTACTTCAATGATGCCAACAAGCTAGGACAAGGGGGATCAGGTTCTGTTTATAAAGGAGTTATGCCAGATGGAATTACTGTTGCCATAAAAAGGCTTAGCTTTAACACTACACAATGGGCAGATCATTTCTTTAATGAGGTCAATTTGATCAGTGGTATTCATCACAAAAATCTAGTAAAGCTTTTAGGGTGCAGCATTACAGGACCTGAAAGCCTTTTAGTTTATGAATACGTGCCTAACTACAGCCTCCATGATCACCTTTCGGGTAGAAGGATTTCTCAACCGCTGAATTGGGAAATCAGGCataagattatattaggaattgcagagggcatggtctaccttcacgaggaatcacatgtgagaatcattcatagagacataaaattaagcaacattctgcttgaggaggacttcacacccaagattgctgattttggacttgctagattgtttccagaagacaaGTCTCACATTAGCACAGCCATTGCTGGCACACTGGGCTATATGGCTCCGGAGTATATTGTTCGTGGGAAGTTGACTGAGAAAGCAGATGTCTACAGTTTTGGAGTTCTAGTTATTGAAATTGTATCAGGCAAAAGAAACAGTTCCTTTGTTATGAATTCATCCTCTCTCCTACAAATGGTTTGGAGCCACTACGGGTCAAATAGGCTATCTGAAGTTGTTGATCCGACCCTAGAGGGTGCCTTTCCTGTAGAGGAAGCATGCCAACTGCTTCAGATAGGGTTGCTTTGTGCACAAGCATCTGCAGAGTTGAGACCATCAATGTCAGTAGTTGTTAAAATGGTTAATAACAGCCATGAAATTCCTCAGCCAACACAACCACCATTTATTAATTCTGGTAGTGTGGAATTCAACAAATCTGGTTTACCTGGATATAAATTTCAGTCTGGATCCAACACTCAGTCTTCAGGGAACACCATGACTGAAAGTCAGATTGAGCCTAGATGA 1953 0.4521 MINPHLPTSMPCLLLLLFLSLLPAPSLSDPRAQKVALLCTNRTVSSLTRRQVFVANFLAAMDALTPLTRAQGHGGVVKGSQNASVYALGECMKDLSPSDCDVCLAQCKTQLLSCLPFQKGTRGGSLFFDGCFLRYDDYDFFNETLGDQDSAVCGTNGTVGGGVYKANALELVRNLSEVAPRNDGFVVGSVERRNVSVYGLAQCWEFVNGSACRRCLAHAVSRIASCETQEARALNAGCYLRFSARKFFNNSTDLTTPAHHGRRSLAKILAASSAALALLLVVAAVVFFVRKNVVTRRRERRQLGALLDTVNKSKLNVPYEILEKATNYFNDANKLGQGGSGSVYKGVMPDGITVAIKRLSFNTTQWADHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNYSLHDHLSGRRISQPLNWEIRHKIILGIAEGMVYLHEESHVRIIHRDIKLSNILLEEDFTPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYIVRGKLTEKADVYSFGVLVIEIVSGKRNSSFVMNSSSLLQMVWSHYGSNRLSEVVDPTLEGAFPVEEACQLLQIGLLCAQASAELRPSMSVVVKMVNNSHEIPQPTQPPFINSGSVEFNKSGLPGYKFQSGSNTQSSGNTMTESQIEPR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00699 650 Gene3D Phosphorylase Kinase; domain 1 289 404 - -
Cca11g00699 650 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Cca11g00699 650 ProSiteProfiles Gnk2-homologous domain profile. 32 140 IPR002902 -
Cca11g00699 650 CDD STKc_IRAK 335 599 - -
Cca11g00699 650 MobiDBLite consensus disorder prediction 628 650 - -
Cca11g00699 650 SMART serkin_6 329 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00699 650 Gene3D - 33 140 IPR038408 -
Cca11g00699 650 Gene3D - 148 247 IPR038408 -
Cca11g00699 650 ProSiteProfiles Gnk2-homologous domain profile. 146 247 IPR002902 -
Cca11g00699 650 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 632 - -
Cca11g00699 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 22 632 - -
Cca11g00699 650 Pfam Protein kinase domain 330 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00699 650 Gene3D Transferase(Phosphotransferase) domain 1 405 608 - -
Cca11g00699 650 ProSiteProfiles Protein kinase domain profile. 329 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00699 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Cca11g00699 650 Pfam Salt stress response/antifungal 39 138 IPR002902 -
Cca11g00699 650 Pfam Salt stress response/antifungal 161 244 IPR002902 -
Cca11g00699 650 SUPERFAMILY Protein kinase-like (PK-like) 315 618 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00699 Cca-Chr11 11860779 11865257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00699 24 494 Receptor kinase-like Gene Family AT1G70530 61.603 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca11g00699 Pkinase 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00699 - - gmx:100787359 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00699 11 11860779 11865257 Cca11g00699 11 11860779 11865257 ECH
Cca11g00699 11 11860779 11865257 Cca11g01825 11 43259664 43264263 ECH