Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00698 ATGTCGAAAATGGAGAGAACATTCCCTCTTGTCTATTTCCAATGCCTTGTTTTCCTTCTCATGAAGCATGTATTGCTACCAAAAACAGTGATGGCAGAACCAAGGGCCAAGACTGTCAATATAACATGCAACCATAAGCTAGAGCACAACACCACCGCCTTTGTTCCAAATTTTGTTGCAACCATGGAGAAGATCAGTGAACAGATGCGTAGCAACGGTTATGGCACAGCAGTTGTAGGGACAGGAGGACCTGACACTAATTATGGGTTGGCTCAGTGCTATGGAGATCTCTCATTACTTGACTGTGTGTTATGTTATGCCGAGGCACGCACGGTTCTTCCCCAATGCTTCCCTTACAATGGTGGTCGCATATACCTTGATGGTTGCTTCATGAGGGCTGAGAACTATAGCTTCTATGATGAGTACACAGGGCCAGGAGACAAGGCTGTTTGCCTTAACATAAGAAAGAAGAACACAAGTTTTCAAGATGCAGCAAAGAAGGCTGTTTTGAGTGCAGTTCAAAATGCACCAAACAATAAAGGGTATGCTAGGGAGGAGATTTCTGTAGCAGGAACAGCAAATGGTTCGGTTTATGTTCTGGCTAATTGTTGGAGGAGTTTGGACACAAGGTCTTGTATAGCTTGTCTTGAGAATGCATCTTCTTCCATATTGGGGTGCTTGCCCTGGTCAGAAGGGCGAGCACTGAACACTGGATGCTTCATGAGGTACTCAGACACAAATTTTCTTAACAAGGAACAAGAAAATGAAAACTCGGAAGGTAATGTAGTAGTGATATTGATTGCAATAGTCAGTGCAGTGATTGTTTTGGTGGTTGGAATAGCTCTTGTGGTTTATATCCGCCAACGCAGATATATTCAAAAGAAAAGAAGAGGTTCTAATGATGCAGAAAAGTTAGCTAAGAGCCTTCACCACAATAGCTTGAACTTCAAGTACTCTACACTGGAGAAGGCTACTAATTCTTTTGATGAAACCAACAAGCTTGGACAAGGAGGATTTGGAACGGTTTATAAAGGAGTTCTTGCTGATGGAAGAGAGATTGCTATCAAGAGATTATATTTCAACAACAGACATAGAGCAGCAGATTTCTACAATGAAGTCAACATAATTAGTAGTTTGGAACACAAGAATCTAGTCAGACTCTTGGGATGCAGTTGTTCAGGACCTGAAAGCCTGCTTATATATGAATATCTATCTAACAGAAGTCTTGATCGATTCATATTTGATAAGAACAAGGGTAAAGAACTAAACTGGGATAAGAGATATCACATTATCATCGGTACAGCTGAAGGATTGGTTTACCTACATGAGAACTCCAACATTAGGATAATTCACAGAGATATAAAAGCCAGCAACATCTTATTGGATGCAAAACTTCGCGCTAAAATTGCTGATTTTGGTTTGGCCAGGTCCTTTCAAGAAGATAAAAGCCACATTAGTACAGCTATTGCTGGAACTTTGGGTTATATGGCTCCTGAGTACCTAGCACATGGTCAGTTAACAGAGAAAGCAGACGTATATAGCTTTGGAGTGTTACTGCTAGAAATAATTACCGGGAGACAGAACAACAGGAGCAAAGCATTAGAATATTCAGACAGCCTAATAATAATGACATGGAAGCATTTTCAGTCAGGAACTGTGGAACAATTAATTGATCCACATTTAGTGTTGGATGACAACCATGAAAGCAATGTTCAGAATGAGATTTTAAGAGTATTGCACATAGGACTTCTGTGCACCCAAGAAATCCCTTCTTTAAGACCATCAATGTCAAAGGCACTAAAGATGCTGACAAAGAAGGAGGAGCACTTGGAAGCTCCCTCTAATCCACCCTTTGTAGATGAAAGTACCATGGAACTCCATGACCAAAATGATGACCCATTTTACCCTCTCAATGCAGCAGACTCATTGGCTACTATGTCCCATAGCTCATTTTATCCCAGGTAA 1965 0.4092 MSKMERTFPLVYFQCLVFLLMKHVLLPKTVMAEPRAKTVNITCNHKLEHNTTAFVPNFVATMEKISEQMRSNGYGTAVVGTGGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNGGRIYLDGCFMRAENYSFYDEYTGPGDKAVCLNIRKKNTSFQDAAKKAVLSAVQNAPNNKGYAREEISVAGTANGSVYVLANCWRSLDTRSCIACLENASSSILGCLPWSEGRALNTGCFMRYSDTNFLNKEQENENSEGNVVVILIAIVSAVIVLVVGIALVVYIRQRRYIQKKRRGSNDAEKLAKSLHHNSLNFKYSTLEKATNSFDETNKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFYNEVNIISSLEHKNLVRLLGCSCSGPESLLIYEYLSNRSLDRFIFDKNKGKELNWDKRYHIIIGTAEGLVYLHENSNIRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIITGRQNNRSKALEYSDSLIIMTWKHFQSGTVEQLIDPHLVLDDNHESNVQNEILRVLHIGLLCTQEIPSLRPSMSKALKMLTKKEEHLEAPSNPPFVDESTMELHDQNDDPFYPLNAADSLATMSHSSFYPR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00698 654 Pfam Protein kinase domain 329 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00698 654 SUPERFAMILY Protein kinase-like (PK-like) 311 632 IPR011009 -
Cca11g00698 654 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Cca11g00698 654 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Cca11g00698 654 CDD STKc_IRAK 334 605 - -
Cca11g00698 654 Gene3D Phosphorylase Kinase; domain 1 288 403 - -
Cca11g00698 654 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 14 635 - -
Cca11g00698 654 SMART serkin_6 328 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00698 654 Gene3D Transferase(Phosphotransferase) domain 1 404 614 - -
Cca11g00698 654 Gene3D - 35 138 IPR038408 -
Cca11g00698 654 Gene3D - 152 248 IPR038408 -
Cca11g00698 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Cca11g00698 654 Pfam Salt stress response/antifungal 49 136 IPR002902 -
Cca11g00698 654 Pfam Salt stress response/antifungal 156 245 IPR002902 -
Cca11g00698 654 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 14 635 - -
Cca11g00698 654 ProSiteProfiles Protein kinase domain profile. 328 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00698 654 ProSiteProfiles Gnk2-homologous domain profile. 36 138 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00698 Cca-Chr11 11852905 11857796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00698 11 654 Receptor kinase-like Gene Family AT1G70520 65.944 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca11g00698 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00698 - - ccaj:109816764 1284.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00698 11 11852905 11857796 Cca11g00698 11 11852905 11857796 ECH
Cca11g00698 11 11852905 11857796 Cca09g00064 09 1012560 1017430 ECH
Cca06g00841 06 21531220 21542250 Cca11g00698 11 11852905 11857796 PCT