Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00697 ATGGAAGACGAAATGTACGGCGTGGCCACGACGGCGGAGTACTCGGAAAAGGCGCTGATGACGCCGGAGAACATATTTCCGGCCGAGTATCACAGCTTCCTAATGTCCTCCGGCGGCCGGATTCCGATGTTCGGATCCGACGAGTTTCTCTCCGCCGCCGTGGCCGAACCCTACCCGAGCGTCGCCGCGCCGGAAATTCAGCGCCAGCACGACGCCTCGTCTCTCATCAAAGCCAGAATCGCTTCGCACCCTCACTACCCTCGCCTCCTCGAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATGGCGTGTTTGTTAGAGGAAATCCGATTAGAAAACGACGTTTGCAAGATGGACGTTGTTTCCACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCTGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAGCAAGATCGAAACGCAGCTTAGCGATCTCTGCACTGGTTCTTCACTTCCAACCCTTTCTGATGATGGAGGTGTATCTTCAGAAGAAGGTTTAAGTGCTGGAGATGGTGATGCACAAGATCAATTACGGGGTGAAGATCGAGAGCTTAAGGATAGGCTTTTACGTAAGTTTGGAAGTCACATTGGTTCTTTGAAAATGGAATTTTCAAAGAAGAAAAAGAGGGGTAAGCTGCCGAAAGACGCTAGGCAGACACTACTACAGTGGTGGAATATTCACTACAAATGGCCTTACCCTACGGAAGGTGATAAGATTGCACTAGCTAAATCAACCGGGTTAGACCAGAAACAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAACCATCTGAGAATATGCCGTTTTCTATGGTGGATGGTCTGACTGGTCGGTTCCTTACTGATGAATGA 945 0.4974 MEDEMYGVATTAEYSEKALMTPENIFPAEYHSFLMSSGGRIPMFGSDEFLSAAVAEPYPSVAAPEIQRQHDASSLIKARIASHPHYPRLLEAYIDCQKVGAPPEMACLLEEIRLENDVCKMDVVSTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLSKIETQLSDLCTGSSLPTLSDDGGVSSEEGLSAGDGDAQDQLRGEDRELKDRLLRKFGSHIGSLKMEFSKKKKRGKLPKDARQTLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFSMVDGLTGRFLTDE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00697 314 SUPERFAMILY Homeodomain-like 232 305 IPR009057 -
Cca11g00697 314 MobiDBLite consensus disorder prediction 182 206 - -
Cca11g00697 314 ProSiteProfiles 'Homeobox' domain profile. 231 294 IPR001356 GO:0003677
Cca11g00697 314 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 3 304 - -
Cca11g00697 314 SMART KNOX1_2 74 118 IPR005540 GO:0003677|GO:0005634
Cca11g00697 314 Pfam ELK domain 211 232 IPR005539 GO:0003677
Cca11g00697 314 SMART ELK_2 211 232 IPR005539 GO:0003677
Cca11g00697 314 SMART KNOX2_2 124 175 IPR005541 GO:0003677|GO:0005634
Cca11g00697 314 Gene3D - 229 300 - -
Cca11g00697 314 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 304 - -
Cca11g00697 314 ProSitePatterns 'Homeobox' domain signature. 269 292 IPR017970 GO:0000981|GO:0006355
Cca11g00697 314 Pfam KNOX2 domain 127 174 IPR005541 GO:0003677|GO:0005634
Cca11g00697 314 Pfam KNOX1 domain 76 116 IPR005540 GO:0003677|GO:0005634
Cca11g00697 314 ProSiteProfiles ELK domain profile. 211 231 IPR005539 GO:0003677
Cca11g00697 314 CDD homeodomain 243 295 IPR001356 GO:0003677
Cca11g00697 314 SMART HOX_1 233 298 IPR001356 GO:0003677
Cca11g00697 314 Pfam Homeobox KN domain 251 290 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00697 Cca-Chr11 11843392 11851329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00697 3 314 Homeobox Transcription Factor Family AT1G23380 65.244 3.84e-141 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca11g00697 KNOX2 7.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00697 - - gmx:100803730 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00697 11 11843392 11851329 Cca11g00697 11 11843392 11851329 ECH
Cca06g00839 06 21514651 21523200 Cca11g00697 11 11843392 11851329 PCT