Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00691 ATGTCAACACTGAACCCTCTTTTTGATCTTCCTGAACAGATATGTTACGTACAATGTGGATTCTGTACAACAATATTAATGGTAAGCGTCCCATGCAGCAGTTTGTCGATGGTGGTGACTGTCAGATGTGGACACTGCACAAGCCTCCTTTCTGTTAATATGATGAAAGCTTCCTTTTTCCCTTTCCACCTTCTAGCTTCCGTTACTCATGTTGAGCCAAAGAGAGGAAGTTCAGAAGATGGTGCAAACATGACTTTGAACAGCTATGATGCATCCATAATGACGCATCCTGACTGTGAGGAAGAGAACGTGACTCAAATGACCAACGTGAATAAACCCCCAGAGAAGAGGCAGCGAACACCATCTGCATATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAAAATCCTAACATGGCTCACAAGGAGGCTTTCAGTACTGCGGCAAAAAATTGGGCCAATTTCCCCCCTTCTCAGTGTAAAGGAGATGAAGACAGCTGTAACCTGACAGACCAACTTCTGGAACTGGACTCCAATGTAGAGCCCAGTGATGCTATTGAGGTGAATAAAGAAGGCCAAGGTTTCCATGGAAAAAAGGTTCCAAGGAGTTCTAGCTATCTGGTCAAGGACACCTTTTGA 648 0.4398 MSTLNPLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFFPFHLLASVTHVEPKRGSSEDGANMTLNSYDASIMTHPDCEEENVTQMTNVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPNMAHKEAFSTAAKNWANFPPSQCKGDEDSCNLTDQLLELDSNVEPSDAIEVNKEGQGFHGKKVPRSSSYLVKDTF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00691 215 SUPERFAMILY HMG-box 110 162 IPR036910 -
Cca11g00691 215 Gene3D High mobility group box domain 102 167 IPR036910 -
Cca11g00691 215 PANTHER AXIAL REGULATOR YABBY 4 1 175 - -
Cca11g00691 215 PANTHER PROTEIN YABBY 6-RELATED 1 175 IPR006780 GO:0007275
Cca11g00691 215 Pfam YABBY protein 11 161 IPR006780 GO:0007275
Cca11g00691 215 CDD HMGB-UBF_HMG-box 119 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00691 Cca-Chr11 11593838 11597581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00691 2 209 C2C2-YABBY Transcription Factor Family AT1G23420 54.955 2.54e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Cca11g00691 YABBY 2.8e-62 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00691 K25796 - gmx:100803001 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00691 11 11593838 11597581 Cca11g00691 11 11593838 11597581 ECH
Cca06g00828 06 21317650 21320562 Cca11g00691 11 11593838 11597581 PCT