Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00680 ATGAGTGGTTTTGGTGCAGTTGAGTGGCTTAGACCCCTTGTTAAGACCAATGCTTGGGATTATATAGTTGTTTGGAAATATGGGGATGACCCAACAAGGTTCATTGAGTGGATAGGTTGTTGTTGTAGAGGGAGTTGCAGTGTGAACATTGATGTGGTGAGGCCAAAAGGGGAAAAGAGTGAAGTATGCCACTTGGCTCCCATTTGCAGGGATAACCATATTCAGCATCAAGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTCTATTCTGGTGTGCATGGAGAGGTTGCCATATCACAACAATCAAGATGGCTTACCCAGGACTCAATTGGAACCCAAGTTTTGATCCCGATTGTTGGTGGCCTTATTGAGCTCTTCACTGAAAAACTGATTCCAATGGATATGAATATGATAGAGTTGATAACAGCACACGGTTGTGTCTCTTCAAAGCAAGAAGCCATATCTGCACAGAGCTACACGACTCTGAACATCAATGAACACTTGCCATTAAGGGAACAATACTCACAGTGGAGGCCACCACACATGTCAACTTTAAATCCTAGTGTCCACCAGCCTGCAACAAAACAGTGCAACTCCCATCCTAGCATTGAAGGGCCCTCCAATGGGTCTAATCCATCAACTGAAGAACCATCACTGGATTCAAAGTTTGCTTGCTTGATTCCACATGAATATATTAAACAGCCATCTAAAATATCTTCCATCCCCAAAACCAAAATGCCCAAGTACAATAAAACTTCAGGGAAACAGAAGGGAGGTTTGACTTCCCTTTGTAGAAATGGGGAAGATAAATCAAAATTGGACAAGGAGCCTCATAAGGAATGCTACCAGGCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAAGATAAAGAAGGGGCTTTTCACTCTGCGGTCTCTAGTCCCCAAGATAACCAAGATGGATAGAGCTGCAATTCTTGCTGATGCAGTTGACTACATAAAGGAATTGCAAACACAAGTAAAACAACTCAAAGATGAGGTCAGGGCATTGGAAGTACAGAACAGTGAGAAAAACACACCACAATTGAGGATGCCATTAGGCAAGGAACAAGAGGGAACCAGAAGTAACCCTCTTAATCAAAGTTCTTCTGAATGCACTAAGAAGACACAGATGAAGGTGCAAGCAGAAGTGCATCACATTAGCAAGACATGTTTCATGATTAAGTTATACTGTGAGCAGAAGAAAGGTGGGTTTTCAAAGTTGATGGAAGCTATTCATTCAATTGGACTGAGGGTGGCTAGTGCCAATATGACCACATTTGGTGGCAAATCCCTGAACATTCTGACGGTTGAGGCAACCAAGCAGGATATTCTCCCAACGAAACTGAAAGAGTATTTAATACAGAAGACAAGTGATGATAGACAAAGTATCTAA 1437 0.4231 MSGFGAVEWLRPLVKTNAWDYIVVWKYGDDPTRFIEWIGCCCRGSCSVNIDVVRPKGEKSEVCHLAPICRDNHIQHQVRTKACEALAQLPFALSLYSGVHGEVAISQQSRWLTQDSIGTQVLIPIVGGLIELFTEKLIPMDMNMIELITAHGCVSSKQEAISAQSYTTLNINEHLPLREQYSQWRPPHMSTLNPSVHQPATKQCNSHPSIEGPSNGSNPSTEEPSLDSKFACLIPHEYIKQPSKISSIPKTKMPKYNKTSGKQKGGLTSLCRNGEDKSKLDKEPHKECYQAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAVDYIKELQTQVKQLKDEVRALEVQNSEKNTPQLRMPLGKEQEGTRSNPLNQSSSECTKKTQMKVQAEVHHISKTCFMIKLYCEQKKGGFSKLMEAIHSIGLRVASANMTTFGGKSLNILTVEATKQDILPTKLKEYLIQKTSDDRQSI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00680 478 MobiDBLite consensus disorder prediction 247 284 - -
Cca11g00680 478 SMART finulus 294 343 IPR011598 GO:0046983
Cca11g00680 478 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 63 472 - -
Cca11g00680 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 358 IPR036638 GO:0046983
Cca11g00680 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Cca11g00680 478 MobiDBLite consensus disorder prediction 185 225 - -
Cca11g00680 478 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 149 IPR025610 -
Cca11g00680 478 CDD ACT_UUR-ACR-like 407 451 - -
Cca11g00680 478 MobiDBLite consensus disorder prediction 373 387 - -
Cca11g00680 478 Gene3D - 281 365 IPR036638 GO:0046983
Cca11g00680 478 Pfam Helix-loop-helix DNA-binding domain 295 338 IPR011598 GO:0046983
Cca11g00680 478 Coils Coil 327 354 - -
Cca11g00680 478 PANTHER TRANSCRIPTION FACTOR BHLH90 63 472 - -
Cca11g00680 478 MobiDBLite consensus disorder prediction 247 267 - -
Cca11g00680 478 MobiDBLite consensus disorder prediction 185 226 - -
Cca11g00680 478 MobiDBLite consensus disorder prediction 353 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00680 Cca-Chr11 11389533 11393301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00680 7 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 29.659 1.13e-60 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00680 bHLH-MYC_N 1.3e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00680 - - gmx:100807261 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00680 11 11389533 11393301 Cca11g00680 11 11389533 11393301 ECH