Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00679 ATGAAGGAGCAGAGGAGGTATAGTTCCTCCGATAAGAGCAAGCCATACTCGACACCTATAAGAGAGCATGAACTTGCGCAGTTCGACGAATCCAGCTTCACCATCATTCAACGTTGGAAGAAAACACAAAGTCTCAAAACCAAGATGGCTCCAAAAAATTCCGACGAGGACGATGATTCTCCTTCTCCATCTACACCTCACAAAGATAAAGAGAAAAAAAAGAGTCATCATAACAAGGATTCAAATGATGATAAGGATTCAGAGGATGATAAGGACTCAGAGGATGATAAGGATTCAGATGATGATAAAGATTCAGATGATGACAAGGATTCAGCTCCATCTAAatcctcatcatcatcgtcatcattatcgccaccatcaccaccactgtcaccatcGCCTCCGCCTCCTGGATTGGAGTATTCACCACCACTATCATTGTTGTCATCACCATCGAAGCATCCGCCACACCCACCATCTAAAGATTTAGAACCACCACCTCCACCATCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCACCATCATCGAAGCATCCGCCACCCCCACCATCTAAAGATTTAGAACCACCACCTCCACCATCACCATCATTGTCACCACCACCATCACCACCGCCGTTGCGGCTACCGTTATCGATGCAGAATGACAATGCTTCCCCTCCTCCTCCTTATTATGCTCGCAAACAGTCACCACCACAGCTCCCTGCTGATAGGCCTTCTTCGCGTGGTGTACCCTCCAATGATTCAGTGCCTGGAGCCTCCGAGAAGTCACAATTAACGGGACCAGGTTTATCGAGCCACCAAGCGAAGCATGGTGATGCTTCATCCAATGCAAACGCAAGTGCGGGTGGTTCTTCCCCTCCCATATCCTCTTCTGGTGATAACTCCGCAAAATATGTTGGCTATACACTCGCTGGGATTTTCGCTGTTGCATTGGTTGCTGTGGCTGTCACTCTTGTTTTCGCGTTCAAGAGGAGGAAACCAAGAGGGGATGCCTACGGTGCACCCTACATGCCACCCCTTAATTTGCAGGTTAAATCAGGTGCTAATGGGCATTACTATGTACAGCAGCCTGGCAAGCCACCTTCCCTTGCAAACTTTGGAAATGGGAACGTTAGCATGAACAATTTAGACTCACCTCAGCCCAAGAGTGCTAAGATAGTTTTCACCTATGACATGGTTATGGAGATAACCAATGCATTTTCTAGTGAAAATGTTATAGGGGAAGGAGGGTTTGGGTGTGTTTACAAAGGTTCTTTGGCAAATGGAAAAGCAGTTGCTGTTAAGCAGCTTAAGGTTGGCGGTGGTCAGGGAGAGAGGGAATTCAAGGCTGAAGTGGAGATCATCAGCCGAGTTCATCATCGACATTTGGTGTCATTAGTTGGTTATTGCACATTTGAGCACCAAAGAATTCTTATCTATGAGTACGTTCCTAATGGAACACTCCATGATCACTTGCATGGAAGTAGAATGCAAGTGTTGGATTGGGCCAAAAGACTAAAGATTGCACTAGGCGCTGCAAAGGGTTTGGCATATCTGCATGAGGAATGTAACCAAAAGATTATTCACAGAGATATTAAGTCCGCAAACATACTTTTAGATGATGCTTATGAGGCACAGGTTGCAGACTTTGGACTTGCAAGGCTAGCCGATGCTGCCAATAGCCATGTATCAACTAGGGTCATGGGCACATTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACGGATAGATCAGATGTTTATTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACAGGAAGGAAACCTGTTGATCAAACTCAGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATTGAGACACGTGATTTTAGGGAACTAACAGACCCAAGACTCGAAAAACGCTTTGTGGAGAGTGAAATGTTCAGAATGATTGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGCTCCTAGACGGCCTCGTATGGTTCAGGTGGTACGAGTCTTGGATTGTGCAGACGAAGCATCTGATCTATCTAATGGTGTGAAATATGGTCAGAGCATGGTTTATAATTCCGGACAATATGATAAAGAAATTATGTTATTCAGAAGGATGGCCAATGGCACATTTGTTGATTCTGATTTTGATACGTATACCAGAGAATACAATTTTTCAAGTGAGATATCAAGAGGATCCCAAATTGAATTGTTGTCGAATAGTTCTAGTGGTGAGTCAGAAACTAGAGCTATTAACATGCAAATGAGCAGTACGGAATGA 3537 0.4722 MKEQRRYSSSDKSKPYSTPIREHELAQFDESSFTIIQRWKKTQSLKTKMAPKNSDEDDDSPSPSTPHKDKEKKKSHHNKDSNDDKDSEDDKDSEDDKDSDDDKDSDDDKDSAPSKSSSSSSSLSPPSPPLSPSPPPPGLEYSPPLSLLSSPSKHPPHPPSKDLEPPPPPSSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPPSSKHPPPPPSKDLEPPPPPSPSLSPPPSPPPLRLPLSMQNDNASPPPPYYARKQSPPQLPADRPSSRGVPSNDSVPGASEKSQLTGPGLSSHQAKHGDASSNANASAGGSSPPISSSGDNSAKYVGYTLAGIFAVALVAVAVTLVFAFKRRKPRGDAYGAPYMPPLNLQVKSGANGHYYVQQPGKPPSLANFGNGNVSMNNLDSPQPKSAKIVFTYDMVMEITNAFSSENVIGEGGFGCVYKGSLANGKAVAVKQLKVGGGQGEREFKAEVEIISRVHHRHLVSLVGYCTFEHQRILIYEYVPNGTLHDHLHGSRMQVLDWAKRLKIALGAAKGLAYLHEECNQKIIHRDIKSANILLDDAYEAQVADFGLARLADAANSHVSTRVMGTFGYMAPEYATSGKLTDRSDVYSFGVVLLELVTGRKPVDQTQPLGDESLVEWARPLLLRAIETRDFRELTDPRLEKRFVESEMFRMIEAAAACVRHSAPRRPRMVQVVRVLDCADEASDLSNGVKYGQSMVYNSGQYDKEIMLFRRMANGTFVDSDFDTYTREYNFSSEISRGSQIELLSNSSSGESETRAINMQMSSTE 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00679 1178 ProSiteProfiles Protein kinase domain profile. 816 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00679 1178 MobiDBLite consensus disorder prediction 1157 1178 - -
Cca11g00679 1178 Gene3D Transferase(Phosphotransferase) domain 1 892 1109 - -
Cca11g00679 1178 SMART serkin_6 816 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00679 1178 ProSitePatterns Protein kinases ATP-binding region signature. 822 844 IPR017441 GO:0005524
Cca11g00679 1178 SUPERFAMILY Protein kinase-like (PK-like) 792 1089 IPR011009 -
Cca11g00679 1178 MobiDBLite consensus disorder prediction 149 624 - -
Cca11g00679 1178 MobiDBLite consensus disorder prediction 125 142 - -
Cca11g00679 1178 MobiDBLite consensus disorder prediction 649 709 - -
Cca11g00679 1178 Gene3D Phosphorylase Kinase; domain 1 784 891 - -
Cca11g00679 1178 MobiDBLite consensus disorder prediction 50 86 - -
Cca11g00679 1178 MobiDBLite consensus disorder prediction 30 49 - -
Cca11g00679 1178 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 524 1131 - -
Cca11g00679 1178 MobiDBLite consensus disorder prediction 87 107 - -
Cca11g00679 1178 MobiDBLite consensus disorder prediction 1 28 - -
Cca11g00679 1178 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 524 1131 - -
Cca11g00679 1178 CDD STKc_IRAK 822 1090 - -
Cca11g00679 1178 ProSitePatterns Serine/Threonine protein kinases active-site signature. 936 948 IPR008271 GO:0004672|GO:0006468
Cca11g00679 1178 MobiDBLite consensus disorder prediction 1 709 - -
Cca11g00679 1178 Pfam Protein tyrosine and serine/threonine kinase 819 1086 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00679 Cca-Chr11 11379544 11389044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00679 689 1150 Trihelix Transcription Factor Family AT5G38560 53.648 6.04e-168 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca11g00679 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00679 - - ccaj:109806961 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00679 11 11379544 11389044 Cca11g00679 11 11379544 11389044 ECH