Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00677 ATGCAAAACATGTCTCTCTGTGGTGCACCCTCCTCCACAACTTCAcacctcacatcccttccttcgcttccttcactctctctcagattttccttcacttTCCGGGAAAACAGAAACCCAACTACACACCTTTCCTCTCACAAGCTCTCCTTTTCAGTGAGGCCTTCAAGAGTGTTGGTAAAGTCTCAGGCCACTGCACCTGCTTCTTCTGAGGCTGTGAAAGTGACACCTGTACCTTCTGACATGAAGGCATGGGTGTATGGAGAATATGGGGGTGTGGATGTCTTGAAGCTTGACTCCAATGTTGCTGTGCCTGATGTCAATGAGGATCAGGTCCTTGTCAAAGTTGTTGCTGCAGCTCTTAACCCTGTTGATGCCAAGAGAAGACAGGGAAAGTTCAAGGCCACTGATTCTCCTCTTCCGACTGTTCCGGGCTATGATGTTGCGGGTGTGGTGGTGAAGGTTGGTAGTCAAGTGAAGGAGTTTAAAGTGGGTGATGAAGTGTATGGAGATGTAAATGAGAAAGCTCTAGAAGGGCCTAAGCAGTTCGGGTCTTTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACCAAAACCAAAGACTTTGGACTTTGCTCAAGCTGCTTCTCTTCCTCTGGCAATTGAGACTGCTTATGAGGGTTTGGAGAGGACTGGATTTTCTCCTGGTAAATCTATTCTTGTTCTCAATGGTTCTGGAGGAGTAGGAAGCCTAGTGATTCAGCTAGCTAAGCAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTTCAAGCACTAGACATTTGGACCTGTTGAAAAGTCTGGGAGCTGATTTGGCTATTGACTACACAAAAGAGAACATTGAGGATTTGCCAGAAAAATTTGATGTAGTTTATGATGCCATTGGGCAATGTGACAGGGCAGTGAAGGTTGTGAAAGAAGGTGGTAGTGTGGTGGCACTCACAGGTGCTGTTACACCACCTGGCTTCAGATTTGTAGTTACTTCCAATGGAGCTGTTCTGAGGAAACTAAACCCTTACTTAGAGAGTGGAAAGGTGAAGCCAATTGTAGACCCCAAAGGTCCATTCTCCTTTGACCAGCTTGATGAAGCCTTCTCTTACCTTGAAACAAACCGAGCCACTGGGAAGGTTGTTATACATCCCATCCCTTGA 1173 0.4425 MQNMSLCGAPSSTTSHLTSLPSLPSLSLRFSFTFRENRNPTTHLSSHKLSFSVRPSRVLVKSQATAPASSEAVKVTPVPSDMKAWVYGEYGGVDVLKLDSNVAVPDVNEDQVLVKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSQVKEFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLAPKPKTLDFAQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRHLDLLKSLGADLAIDYTKENIEDLPEKFDVVYDAIGQCDRAVKVVKEGGSVVALTGAVTPPGFRFVVTSNGAVLRKLNPYLESGKVKPIVDPKGPFSFDQLDEAFSYLETNRATGKVVIHPIP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00677 390 Gene3D - 89 386 - -
Cca11g00677 390 SMART PKS_ER_names_mod 91 386 IPR020843 GO:0016491
Cca11g00677 390 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 231 252 IPR002364 GO:0008270|GO:0016491
Cca11g00677 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 204 327 IPR036291 -
Cca11g00677 390 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 44 390 - -
Cca11g00677 390 Gene3D - 223 337 - -
Cca11g00677 390 CDD MDR_like_2 82 386 - -
Cca11g00677 390 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 44 390 IPR044626 GO:0016628
Cca11g00677 390 Pfam Zinc-binding dehydrogenase 275 386 - -
Cca11g00677 390 Pfam Alcohol dehydrogenase GroES-like domain 110 172 IPR013154 -
Cca11g00677 390 SUPERFAMILY GroES-like 79 236 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00677 Cca-Chr11 11298094 11304919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00677 109 329 Monolignol Biosynthesis Gene Families AT4G37970 23.200 7.16e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00677 K18980 - gmx:100810816 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00677 11 11298094 11304919 Cca11g00677 11 11298094 11304919 ECH