Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00671 ATGTCAAAACCACCTACAGCCATTATGAGCAATATATCTAATAGCATGTTACATTTTTCTTGTTCTAATGTAATGAAATTTCAAGGGAAAAGTTCATTGCTATTGCTTCTTCTGCTGTTCATCACCCTTCATCTTGGGTGTTCTCAAACTTCTGTTTATAATTGTGTCCTTGATATTCAATTTTCTTCTGCATTGACTAGTCCAAATTGTGATTTGTACAATTGGGGAGGGTTTATCAATGGCTGTTGTGGACAATATTTTGGTGATTACCTATATGCTTTGGGGCTGAGGGCAAACCAAACTGGAAAAATATTCTTGAATTCCTCAGAACAGAAAAATTGTTTAGCATCAATAGAAGCTTTTGAGAAAAATTTCACTTGTTATGGGATAGAGAAGCTAACAAGTGGCGGTGGTGGTTGCTCTGATTTCACTGTCACAGACGTTATTAATCAGCTTGGAGACAACTTTAGGAGATTGGATGAAGATTGCATTTCTTTGAACATAAATAGCAGGCCAAATGAAACTTGCACTAAATGTTTGAAAGCATGGGAAGATATCAGTGAATCAGAAACTACAAGGGGATTGGAATCAGCAAATAATAGTGCTTATCTTTGTAGGTTTGCTGAACTTGTCTCAGTAACAAGCACAAGAATTTATGATAGGGAATCAATTCAGGAAGTGTATAAATGCCTTGGGAAATATACCCTTTCTACAGTTAACCAAGAAGTTAAGGCTAGGGGCAATGCTAATATCAAAACAGGCCTCTGGATTGCCTTTGGCATAACAGGAGTTATAGTTGTGGTGCTTCTTGCGGCACTTACATCATCTGTCACAAGAAAAAGAGCTCCAATCTTACAAGATGAGTCTGATCCAACGTCACTGAAGATAACTTTGAGGGAAGTTTATGTAGCAACAAACAATCTCAGCGCTTCAAATTTCATAGGCCAAGGCATAGCCGGAAAAGTGTACAAAGGTGTACTCTCCAACAATCAAGCTGTTGCAGTGAAGCATATCACCAATGAAGGTTACATGGAGACATTTGTAAGAGAAGTGAGAAGCCTTTCCCATGTAAGACATCAAAATCTAGTAGCTTTGTTGGGATACTGTGAAAGTGAAGCTGAATGCTTCCTAGTGTATGAGCTATGCCACAAAGGAAACCTCTCAGAGTGGCTATTTGGCACTGGTAAAGTTCTCTCATGGATTCAAAGACTAGAGATTGCCATTGATAGTGCAAGAGGTCTTGAGTTTCTACACACCTACCCAGTTGGCTGCATAGTTCACCGTGACATAAAGCCATCAAACATTCTTATTGATGCCAACTTCCAAGCAAAGCTTTCAGATTTTGGGTTGTCCAGGGTTATGGACCTTGGTCAATCCTATGTCAGCTCTGAAGTAAGAGGAACATTTGGTTATATTGATCCTGAATATAGGACAAATCACCATGTAAAAGCCTCAGGAGATGTCTACAGCTTTGGAATAGTGTTACTGCAACTTCTCTCAGGACAACGGGTCCTTAACATTGATCTCCAGAGACCAATGTCCCTGGGTAAAATGGCCAGAGATGTTGAGAGAAGAGGTGATATTTCAGAATTTGCTGATCCTAAACTCAAAGGGGAGTACTCTGTTGAAGCGTTTGACATCGTACTAAAGCTGGCTTTGTCTTGCATAGGGCTCAAGCGACAAAGGCCCTCTATAGAACAAGTGTTATATAGCCTAGTAAAGGCACTCGATATCTCATCATAA 1743 0.3964 MSKPPTAIMSNISNSMLHFSCSNVMKFQGKSSLLLLLLLFITLHLGCSQTSVYNCVLDIQFSSALTSPNCDLYNWGGFINGCCGQYFGDYLYALGLRANQTGKIFLNSSEQKNCLASIEAFEKNFTCYGIEKLTSGGGGCSDFTVTDVINQLGDNFRRLDEDCISLNINSRPNETCTKCLKAWEDISESETTRGLESANNSAYLCRFAELVSVTSTRIYDRESIQEVYKCLGKYTLSTVNQEVKARGNANIKTGLWIAFGITGVIVVVLLAALTSSVTRKRAPILQDESDPTSLKITLREVYVATNNLSASNFIGQGIAGKVYKGVLSNNQAVAVKHITNEGYMETFVREVRSLSHVRHQNLVALLGYCESEAECFLVYELCHKGNLSEWLFGTGKVLSWIQRLEIAIDSARGLEFLHTYPVGCIVHRDIKPSNILIDANFQAKLSDFGLSRVMDLGQSYVSSEVRGTFGYIDPEYRTNHHVKASGDVYSFGIVLLQLLSGQRVLNIDLQRPMSLGKMARDVERRGDISEFADPKLKGEYSVEAFDIVLKLALSCIGLKRQRPSIEQVLYSLVKALDISS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00671 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Cca11g00671 580 SMART serkin_6 308 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00671 580 Gene3D Phosphorylase Kinase; domain 1 271 381 - -
Cca11g00671 580 PANTHER - 48 580 - -
Cca11g00671 580 Gene3D Transferase(Phosphotransferase) domain 1 383 579 - -
Cca11g00671 580 Pfam Protein kinase domain 312 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00671 580 SUPERFAMILY Protein kinase-like (PK-like) 290 572 IPR011009 -
Cca11g00671 580 Pfam SPARK 54 192 IPR043891 -
Cca11g00671 580 PANTHER OS01G0750732 PROTEIN 48 580 - -
Cca11g00671 580 ProSiteProfiles Protein kinase domain profile. 308 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00671 Cca-Chr11 11151106 11155015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00671 261 576 Receptor kinase-like Gene Family AT3G46330 39.198 2.99e-59 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Cca11g00671 Pkinase 3.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00671 - - gsj:114395768 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00671 11 11151106 11155015 Cca11g00671 11 11151106 11155015 ECH