Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00668 ATGACAGCATATGAAAGGCAAAGGATCTTGTTGCGTATAGCTGATCTGGTTGAAAAGCACAATGATGAGATTGCAGCACTTGAGACTTGGGATAATGGAAAGCCTTATGAACAATCTTCTAAGATTGAAATTCCAATGCTGGTTCGCCTTATTCGATACTACGCTGGTTGGGCAGATAAGATTCATGGTCTTACGGTTCCAGCTGATGGACCTTATCATGTGCAAACATTGCATGAACCTATTGGTGTGGCGGGTCAGATCATTCCTTGGAACTTCCCTCTTCTCATGTTTGGTTGGAAGGTTGGACCAGCATTGGCCTGTGGCAACACAATTGTTATCAAAACAGCTGAGCAGACACCATTGTCTGCTTTATATGTAGCACAACTATTTCATGAGGCTGGACTTCCTCCTGGTGTTTTGAATGTGGTATCAGGCTTTGGTCCAACTGCTGGTGCTGCTCTTGCTAGTCACATGGAAGTTGATAAGCTTGCTTTCACTGGTTCCACTGATACTGGAAAAGTTGTTCTTGAACTGGCGGCTAAAAGCAACCTTAAACCTGTAACTTTGGAGCTTGGTGGGAAATCACCCTTTATTGTGTGTGAAGATGCTGATGTAGATCAGGCTGTTGAGCTTGCACACTTTGCTTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGTTCTCGAACATTTGTACATGAAAGTGTCTACGATGAGTTTGTTGAGAAAGCAAAGGCTCGTGCTTTGAAACGTGTTGTTGGTGATCCTTTCAAGGGGGGAATAGAGCAAGGTCCTCAGATTGATTCAGAACAATTTGAGAAAATACTGAGGTATATCAGATCTGGTGTTGAAAATGGGGCTACCCTTGAAACCGGAGGAGACAGGCTTGGCAACAAAGGCTTCTACATTCAACCTACTGTCTTCTCAAATGTTAAGGATGGCATGCCGATTGCAAAGGAAGAGATCTTTGGTCCAGTCCAAACCATATTAAAATTCAAGGACCTTGGTGAGGTAGTTCAAAGAGCAAATAACTCACGTTATGGGCTTGCAGCAGGGATATTCACACAGAACATAGACACTGCGAACTCTTTGACAAGGGCACTGAGGGTTGGAACAGTGTGGACAAACTGCTTTGACACATTTGATGCTGCAATTCCTTTTGGAGGGTACAAAATGAGTGGTCAGGGCAGAGAAAAAGGAGAGTATAGTCTCAAGAACTACTTGCAAGTGAAGGCTGTTGTTACTTCCTTGAAGAACCCAGCATGGCTTTGA 1272 0.4363 MTAYERQRILLRIADLVEKHNDEIAALETWDNGKPYEQSSKIEIPMLVRLIRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFGWKVGPALACGNTIVIKTAEQTPLSALYVAQLFHEAGLPPGVLNVVSGFGPTAGAALASHMEVDKLAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESVYDEFVEKAKARALKRVVGDPFKGGIEQGPQIDSEQFEKILRYIRSGVENGATLETGGDRLGNKGFYIQPTVFSNVKDGMPIAKEEIFGPVQTILKFKDLGEVVQRANNSRYGLAAGIFTQNIDTANSLTRALRVGTVWTNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTSLKNPAWL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00668 423 Pfam Aldehyde dehydrogenase family 1 413 IPR015590 GO:0016491
Cca11g00668 423 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 1 423 - -
Cca11g00668 423 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 189 196 IPR029510 GO:0016491
Cca11g00668 423 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 423 - -
Cca11g00668 423 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 217 228 IPR016160 GO:0016491
Cca11g00668 423 SUPERFAMILY ALDH-like 1 417 IPR016161 GO:0016491
Cca11g00668 423 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 413 IPR016162 GO:0016491
Cca11g00668 423 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 195 384 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00668 Cca-Chr11 11090208 11094317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00668 1 423 Aldehyde Dehydrogenase Gene Family AT3G48000 79.669 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00668 K00128 - gmx:100811891 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00668 11 11090208 11094317 Cca11g00668 11 11090208 11094317 ECH
Cca06g00810 06 21107183 21112083 Cca11g00668 11 11090208 11094317 PCT