Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00663 ATGAAGCGGGATGGGATTGAAGAGAGCAGCACGATCACAAGGTTGTTGGGTAGAAGCAGTAGTGGTGGGAGCAGTGAGTCAAGGTGGGTTGATGGCAGTGAAGTTGACTGGGATGAGGTTCCTATGTGGTCAAAGCATGATGGTAGAGAAGGGTATGGGTCAATCAGGAGGAGGCTTGCCAAGAAGCCCAAGAGAGTTGATTCATTTGATGTTGAAGCCATGGAGATTGCTGGAACTCATGCTCACCACTCCAAGGATCTTTCCCTCTGGCCCACTCTTGCTTTGGCATTTAATACTCTTGGCGTGGTATATGGTGACATGGGAACAAGTCCTCTGTATGTTTTTGCTGATGTCTTCAGCAAGGTTCCAATTATGTCAGACGCTGATGTCTTGGGGGCATTATCATTAGTAATGTATACAATAGCACTTATTCCATTAGCGAAATATGTTTTTATAGTCCTCAAAGCAAATGATAATGGAGAAGGAGGAACCTTTGCACTATACTCGCTGATTTGCAGATATGCAAATGTGAGTCTGCTTCCAAATCGTCAACAAGCTGATGAGTATATCTCTAGTTTTAAGCTCAAACTGCCTACTCCAGAACTGGAAAGGGCTTTAAAAATAAAGGAGACTTTGGAGAGGAAATCATTTTTGAAAAACATATTATTGGTGTTGGTTCTTCTGGGAGCTTCCATGGTTATTGGAGATGGTATTCTAACCCCAGCAATATCAGTGATGTCTGCCATAAGTGGTCTGCAGGATCAAATAAATGGATTTGGTACTGGTGAAGTGGTTGGTATTTCTATTGTAGTCCTGGTGGTTTTGTTCAGCATACAACGGTTTGGTACCGGTAAAGTGGGTTTCATGTTTTCACCTATACTTGCCTTGTGGTTCTTTTCTCTGGGTTCTATTGGGCTATATAATATAGTTAAATACGATATCACTGTTCTGAGAGCATTTAATCCGGCTTATATCTATTATTTCTTCAAGAATAATGGCAAAGGTGCATGGTCAGCTCTTGGTGGTTGTGTTCTGTGCATTACAGGTGCAGAAGCAATGTTTGCAGATCTGGGTCATTTTTCTGTACCAGCAATACAGATTGCCTTCACTTGTGTGGTATTTCCCTGTCTCCTCCTTGCTTATATGGGCCAAGCTGCTTATTTGACGAAGAACCCGAGTTCTTATTCAAGCGTATTCTACAAGTCTGTTCCAGAGTCTCTCTTCTGGCCAGTGTTTGTGATAGCCACACTTGCTGCTATGATTGCCAGCCAAGCAATGATATCGGCTACGTTTTCATGCATAAAGCAATCTATGGCTTTGGGATGCTTCCCCAGGCTCAAGATAATTCACACCTCAAAAAGGTTCATGGGTCAAATTTACATCCCCGTAGTTAATTGGTTTCTGATGATCATGTGCATAGTGGTGGTTTCTGTCTTCCAAAGCACTACTGATATTGCAAATGCATATGGCATTGCTGAAGTTGGTGTCATGATGGTTAGCACGACCTTGGTGACCCTTGTGATGCTTTTAATTTGGCAGACCAACTTGTTTTTGGCATTTTGTTTCCCTATTGTATTTGGTTCAGTGGAGTTAATTTACATGTCTTCTGTTCTATCCAAAATCTTTGAGGGTGGCTGGCTTCCCCTTGCCTTTGCTACCTTTTTCCTCTCTTTGATGTACACGTGGAACTATGGGAGTGTGTTGAAGTACCGAAGTGAAGTTCGAGAGAAGGTTTCAATGGACTCTATGCTTGAGCTTGGCTCCAATCTTGGAACATTCCTTCTGAACCTTCCAGCTCTTCACTCTACTATTGTTTTTGTCTGCATTAAATATGTCCCTGTCCCTGTGGTTCCTCAAGAGGAAAGATTTATGTTCCGAAGAGTTTGCCCCAAAGATTACCATATTTTCCGCTGTGTGGCGAGATATGGTTACAAAGATGTAAGGAAGGAAGATCACCGTGCATTTGAGCAACTTCTTATTGAGAGTCTTGAGAAATTCTTGAGAAGGGAAGCTCTAGAAACAGCCTTGGAGTTGGAGGGCAACTTAACTGATGACGTGGATGTTGTCTCTGTGAATACAAGAGATTCTGATCTTCCTGATGGTACTGTGGCTGAGGAGCTTAGGATTCCACTTATGCATGATCAGAAATTGGAAGAAACAGGAATTTCTTCTGCCTCTCAAGAAGTTGCATCAGCATTGCCATCTAGTTACATGCCATCAGAAGAAGATCCGGGTCTTGAATACGAGCTTTCAGCCCTTAGAGAAGCAATGGAATCAGGATTCACCTATTTGCTTGGACATGGGGATGTGAGGGCAAAGAAGAACTCTTTTTTCGTTAAGAAATTGCTGATAAATTATTTCTATGCATTTCTCAGAAAGAACTGCAGAGGAGGTACAGCAAACATGAGGGTGCCTCACACCAATATCATTCAAGTTGGGATGACATATATGGTCTGA 2457 0.4237 MKRDGIEESSTITRLLGRSSSGGSSESRWVDGSEVDWDEVPMWSKHDGREGYGSIRRRLAKKPKRVDSFDVEAMEIAGTHAHHSKDLSLWPTLALAFNTLGVVYGDMGTSPLYVFADVFSKVPIMSDADVLGALSLVMYTIALIPLAKYVFIVLKANDNGEGGTFALYSLICRYANVSLLPNRQQADEYISSFKLKLPTPELERALKIKETLERKSFLKNILLVLVLLGASMVIGDGILTPAISVMSAISGLQDQINGFGTGEVVGISIVVLVVLFSIQRFGTGKVGFMFSPILALWFFSLGSIGLYNIVKYDITVLRAFNPAYIYYFFKNNGKGAWSALGGCVLCITGAEAMFADLGHFSVPAIQIAFTCVVFPCLLLAYMGQAAYLTKNPSSYSSVFYKSVPESLFWPVFVIATLAAMIASQAMISATFSCIKQSMALGCFPRLKIIHTSKRFMGQIYIPVVNWFLMIMCIVVVSVFQSTTDIANAYGIAEVGVMMVSTTLVTLVMLLIWQTNLFLAFCFPIVFGSVELIYMSSVLSKIFEGGWLPLAFATFFLSLMYTWNYGSVLKYRSEVREKVSMDSMLELGSNLGTFLLNLPALHSTIVFVCIKYVPVPVVPQEERFMFRRVCPKDYHIFRCVARYGYKDVRKEDHRAFEQLLIESLEKFLRREALETALELEGNLTDDVDVVSVNTRDSDLPDGTVAEELRIPLMHDQKLEETGISSASQEVASALPSSYMPSEEDPGLEYELSALREAMESGFTYLLGHGDVRAKKNSFFVKKLLINYFYAFLRKNCRGGTANMRVPHTNIIQVGMTYMV 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00663 818 PANTHER POTASSIUM TRANSPORTER 12-RELATED 14 818 - -
Cca11g00663 818 MobiDBLite consensus disorder prediction 12 28 - -
Cca11g00663 818 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 14 818 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cca11g00663 818 Pfam K+ potassium transporter 97 586 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cca11g00663 818 MobiDBLite consensus disorder prediction 1 31 - -
Cca11g00663 818 TIGRFAM kup: potassium uptake protein 95 588 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00663 Cca-Chr11 10998062 11005874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00663 4 818 Inorganic Solute Cotransporters AT1G60160 72.005 0.0 1203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00663 K03549 - gmx:100814419 1423.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00663 11 10998062 11005874 Cca11g00663 11 10998062 11005874 ECH
Cca11g00663 11 10998062 11005874 Cca06g00808 06 21043009 21048202 PCT