Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00658 ATGGCTTCAAGATCATATGCTAATCTCTTAGACTTAGCTAGTGGAGACTTGCTTGATATTCCTCACACTCCAAGAGCTCTTCCAAGGGTTATGACCGTTCCTGGAATTATTTCTGATCTTGATGGTTACAGTTGTAATGATGGGGATTCAGATGTTAGCTCTTCTGGATGTAGGGAGCGGAAAATCATTGTGGCAAACATGTTGCCATTGCAGGCTAAAAGAGATATAGAAACTGCTAAATGGTGCTTCAGTTGGGATGAGGATGCAATTTTATTACAATTAAAAGATGGTTTTCCTTCTGATACTGAGGTAATCTATGTGGGTTCCCTCAAGGTTGAAATAGATGCTTGTGAGCAGGAAGCAATTGCTCAGAGATTGCTGGATGAATTTAATTGTGTACCTACCTTTCTACCCCATGATCTTCAGAAAAAGTTCTATCTTGGCTTCTGTAAGCAGCAACTCTGGCCACTCTTTCATTATATGCTACCCATATGCCCAGATCATGGTGATCGCTTTGACCGTATACTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTCATGGAAGTAATTAACCCTGATGATGATTTTGTTTGGGTTCATGACTATCACTTAATGGTTTTGCCTACTTTCTTGAGGAAGCGATATAATCGGGTTAAACTTGGGTTCTTTCTGCATAGTCCTTTCCCTTCATCAGAAATCTACCGAACTTTGCCTGTAAGGGATGAAATTTTGAGGGGATTGTTGAACTCTGATTTAATTGGGTTTCATACATTTGATTATGCTCGCCACTTCCTTTCTTGCTGCAGTAGAATGCTAGGTCTGGACTACGAATCTAAGCGAGGACATATAGGGCTTGATTACTTTGGCCGCACTATATTTATTAAAATTTTGCCTGTAGGCATTCACATGGGTAGGCTTGAATCAGTATTAAATCTTTCTTCTACATCTGCTAAACTAAAAGAGGTTCAGGAAGAGTTTAAGGGTAAGAAAGTAATTCTTGGTGTTGATGACATGGATATTTTTAAGGGCATTAGTCTGAAACTTCTAGCTGTCGAGCATCTGCTGCAGCAAAATCCAGATTTGCAGGGAAAAGTTGTCCTAGTTCAAATTGTAAATCCTGCTAGGGGCTCAGGGAAGGATGTTCAGGAAGCAAAGAATGAAACATATTTAATTGCCCGGAGGATCAATGATACATATAGCTCAAATAATTACCAGCCAGTCATTCTCATTGATCGCCCTGTTCCTCGCTTTGAGAAGAGTGCCTATTATGCTGTAGCTGAGTGTTGCATTGTCAATGCTGTAAGGGATGGTATGAACTTAGTTCCATACAAATATATCGTCTGCAGGCAGGGAACCGCACAACTAGATGAAGCATTGGGTAGAAAAAGTGATTCTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCCCCTTCTCTTAGTGGGGCAATTAGGGTCAATCCCTGGGACATAGATGCCGTAGCTGATGCTATGTATGCAGCCCTTACTATGAGTGATTCAGAGAAGCAGTTACGTCATGAGAAACACTATCGGTATGTCAGTTCTCATGATGTGGCATATTGGGCTCGCAGCTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGATGCTGGGGATTTGGTTTGGGCTTGGGGTTCAGAGTTGTTTCTCTTTCTCACGGTTTTAGGAAGTTGTCAATTGACCATATTGTTTCAGCATACAAGAGAACCAACCGAAGGGCCATCTTTCTTGATTATGATGGCACTGTTGTACCACAATCTTCCATAAGTAAAATCCCCAGCCCTGAAGTCATCTCTGTCTTGAATGCTCTGTGTAATGATCCCAAGAATATTGTGTTCATTGTTAGTGGGAGGGGAAGAGATTCACTGAGtgattggtttacttcatgccaaatgctgggacttgcagcagaacatggttactttttaaggtggaatagagattcagaatgggaagccagtcacttgtctgcggaccttgattggaagaagatagtggaacctgtcatgcagttgtatacagaagcaaccgatggttctaatattgaaattaaggagagtgctttggtgtggcaccatcaagatgcagaccctgattttggttcatgccaagccaaagaattgttggatcacttggaaagtgtgcttgctaatgaacccgcagccgttacgagaggccaacatattgttgaagttaagccacagggaataagaaaaggtttggtagctgaacaggttctttcaaccatggttaatggcggtaatccgccagattttgttctgtgcattggagatgataggtctgatgaggacatgtttgagagcattttgagaacagtttcgagcccatcattaccatcagctccagagatctttgcctgcactgtaggtaggaagcctagcaaggccaagtattttcttgatgatgctgctgatgttgtgaagttgctTCAGGGCATTGCTGCTTCATCCAATCCAAAACCCAGGCATCTTGCTCATTTTCAGGTCTCTTTTGAGAGCACAGTTTGA 2586 0.3217 MASRSYANLLDLASGDLLDIPHTPRALPRVMTVPGIISDLDGYSCNDGDSDVSSSGCRERKIIVANMLPLQAKRDIETAKWCFSWDEDAILLQLKDGFPSDTEVIYVGSLKVEIDACEQEAIAQRLLDEFNCVPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPICPDHGDRFDRILWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLSSTSAKLKEVQEEFKGKKVILGVDDMDIFKGISLKLLAVEHLLQQNPDLQGKVVLVQIVNPARGSGKDVQEAKNETYLIARRINDTYSSNNYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAQLDEALGRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADAMYAALTMSDSEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYTKRCWGFGLGLGFRVVSLSHGFRKLSIDHIVSAYKRTNRRAIFLDYDGTVVPQSSISKIPSPEVISVLNALCNDPKNIVFIVSGRGRDSLSDWFTSCQMLGLAAEHGYFLRWNRDSEWEASHLSADLDWKKIVEPVMQLYTEATDGSNIEIKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAAVTRGQHIVEVKPQGIRKGLVAEQVLSTMVNGGNPPDFVLCIGDDRSDEDMFESILRTVSSPSLPSAPEIFACTVGRKPSKAKYFLDDAADVVKLLQGIAASSNPKPRHLAHFQVSFESTV 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00658 861 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 593 795 IPR006379 -
Cca11g00658 861 Gene3D - 591 708 IPR023214 -
Cca11g00658 861 Gene3D - 721 852 IPR023214 -
Cca11g00658 861 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Cca11g00658 861 TIGRFAM T6PP: trehalose-phosphatase 590 839 IPR003337 GO:0003824|GO:0005992
Cca11g00658 861 Gene3D Glycogen Phosphorylase B; 54 312 - -
Cca11g00658 861 Pfam Trehalose-phosphatase 595 828 IPR003337 GO:0003824|GO:0005992
Cca11g00658 861 SUPERFAMILY HAD-like 592 839 IPR036412 -
Cca11g00658 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 549 - -
Cca11g00658 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 852 IPR001830 GO:0003824|GO:0005992
Cca11g00658 861 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Cca11g00658 861 CDD HAD_TPP 593 834 - -
Cca11g00658 861 Gene3D Glycogen Phosphorylase B; 313 529 - -
Cca11g00658 861 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00658 Cca-Chr11 10824277 10829519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00658 1 861 Trehalose Biosynthesis Gene Families AT1G60140 74.216 0.0 1381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00658 K16055 - gmx:100775779 1689.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00658 11 10824277 10829519 Cca11g00658 11 10824277 10829519 ECH
Cca06g00807 06 21006646 21011359 Cca11g00658 11 10824277 10829519 PCT