Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00640 ATGGGAAACAGTGAGGAAGGGAAATCTGTTAAGACTGGAAGTCCTTCTTCACCTGCTACAACTGATCAGACCAATCAGACCAACCAGCCTAACATTCATGTGTATCCTGATTGGGCTGCCATGCAGTATTATGGGCCAAGAGTCAACATGCCACCATACTTCAACTCAGCTGTGGCTTCTGGTCATGCTCCACACCCATACATGTGGGGACCGCCACAGGCTATGATGCCACCTTATGGGCCACCTTATGCAGCATTTTATTCGCATGGAGGTGTTTATACTCACCCTACAGTTGCTATTGGGCCACATCCACATGGTCAAGGAGTTCCATCTTCACCTGCTGCCGGGACTCCTTCAAGCATAGAATCACCAACCAAATTATCTGGAAATACTGATCAGGGTTTAATGAAGAAATTGAAAGGATTTGATGGGCTTGCAATGTCAATTGGCAATGGCAATGCTGAGAGTGCTGAGCGTGGAGCTGAAAACAGGCTGTCACAAAGTGTGGATACTGAGGGTTCCAGTGATGGAAGTGATGGCAACACTGCAGGGGCTAATCAAACTAAAGGGAAAAGAAGCCGAGAGGGAACACCAACCACCACAGATGGAGAACGGAAAACTGAGATACAAGATGGGCCAGTTTCCAAAGAGACTGCATCTTCCAAAAAGATTATAACAGCTACCCCGGCTAGTGTTGCAGGAAAATTTGTTGCACCTGTAGTTTCTTCAGGTATGACCACAGCACTGGAGCTTAGAAACCCTTCGACTGTTCATTCTAAGGGAAATGCCCCAACTGGCCCACAACCCTGTACAGTTGTGCCTTCTGAAGCTTGGCTACAGAACGAGCGTGAGCTGAAACGTGAGAGGAGGAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGACTGAGGAAACAGGCTGAGGCTGAAGAACTGGCACGAAAAGTTGAGATGTTAACTGCTGAGAATGTGACACTGAAGTTAGAAATAACTCAATTGACAGAAAGTTCTGAGCAGCTGAGGATGGAAAATTCTGGATTGAGGGAAAAAGTGAGAAACACTCAACTGGGACCAAGGGAAGAGATGATTTTGACCAGCATTGACAACAAGAGGTCTACGCCTGTAAGTACAGAGAACTTGCTATCAAGAGTTAACAATTCCAGTTCTAATGATAGAACTGCAGAGAATGAAAATGATTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTACTGGATACAAATCCTAGGGCTGATGCCGTAGCAGCAGGTTGA 1284 0.4595 MGNSEEGKSVKTGSPSSPATTDQTNQTNQPNIHVYPDWAAMQYYGPRVNMPPYFNSAVASGHAPHPYMWGPPQAMMPPYGPPYAAFYSHGGVYTHPTVAIGPHPHGQGVPSSPAAGTPSSIESPTKLSGNTDQGLMKKLKGFDGLAMSIGNGNAESAERGAENRLSQSVDTEGSSDGSDGNTAGANQTKGKRSREGTPTTTDGERKTEIQDGPVSKETASSKKIITATPASVAGKFVAPVVSSGMTTALELRNPSTVHSKGNAPTGPQPCTVVPSEAWLQNERELKRERRKQSNRESARRSRLRKQAEAEELARKVEMLTAENVTLKLEITQLTESSEQLRMENSGLREKVRNTQLGPREEMILTSIDNKRSTPVSTENLLSRVNNSSSNDRTAENENDFCENKPNSGAKLHQLLDTNPRADAVAAG 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00640 427 MobiDBLite consensus disorder prediction 195 212 - -
Cca11g00640 427 SUPERFAMILY Leucine zipper domain 285 341 IPR046347 GO:0003700|GO:0006355
Cca11g00640 427 SMART brlzneu 282 346 IPR004827 GO:0003700|GO:0006355
Cca11g00640 427 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 289 304 IPR004827 GO:0003700|GO:0006355
Cca11g00640 427 MobiDBLite consensus disorder prediction 1 33 - -
Cca11g00640 427 Gene3D - 285 338 - -
Cca11g00640 427 MobiDBLite consensus disorder prediction 252 269 - -
Cca11g00640 427 MobiDBLite consensus disorder prediction 160 194 - -
Cca11g00640 427 MobiDBLite consensus disorder prediction 252 306 - -
Cca11g00640 427 PANTHER G-BOX-BINDING FACTOR 3 1 427 - -
Cca11g00640 427 Coils Coil 295 350 - -
Cca11g00640 427 MobiDBLite consensus disorder prediction 383 427 - -
Cca11g00640 427 Pfam Disordered region downstream of MFMR 132 260 - -
Cca11g00640 427 MobiDBLite consensus disorder prediction 102 135 - -
Cca11g00640 427 CDD bZIP_plant_GBF1 287 335 IPR045314 GO:0003700|GO:0006355
Cca11g00640 427 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 427 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cca11g00640 427 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 284 347 IPR004827 GO:0003700|GO:0006355
Cca11g00640 427 Pfam bZIP transcription factor 282 344 IPR004827 GO:0003700|GO:0006355
Cca11g00640 427 Pfam G-box binding protein MFMR 1 98 IPR012900 -
Cca11g00640 427 MobiDBLite consensus disorder prediction 112 132 - -
Cca11g00640 427 MobiDBLite consensus disorder prediction 150 233 - -
Cca11g00640 427 MobiDBLite consensus disorder prediction 213 227 - -
Cca11g00640 427 MobiDBLite consensus disorder prediction 280 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00640 Cca-Chr11 10438807 10442094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00640 1 427 bZIP Transcription Factor Family AT2G46270 50.230 2.01e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca11g00640 MFMR_assoc 3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00640 K09060 - gmx:547789 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00640 11 10438807 10442094 Cca11g00640 11 10438807 10442094 ECH