Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00630 ATGACACTAAGCATACCCAACTCAGAAACAAACGCCTTTCACGAAGAAGTAGCAGCACCAAACCTGGAGAACCTTTTTCCCTATTGTGATGAAAGCTTCTACCTTTCAAATCCAATTTTTGATAACTATATTGACCCCAGTGGTGGCTTTCTTTACCCTTCGGAGGTTTACCCTTCTTGTGATCCTTTCGTTCCATTCACCTATCATAACATTTTTCCAACTCATGAGAATCACAATCTTCTCTCATGTCCAAAACGCCAAAAATGCTGCTATAATGAACAACTACTGCAATATTCACCGCAGCAAGAGCTTACAACACCAACAGTACCATCCAATTTCTTAGAGGGGTTTATTGTGCCTTATGATAATACTTGCTCCTTGCAAGGAGAGGAAGTGCAACCAAAAATTTTCTATGAGATTCCACAACTTGATACTTATGTAGATTTTGGGGGTCAGAAGAAATGTGAGAATAAAATTAACGAGAGAATCATATCTTCTCAGAGCATAGCAGCAAGAGAAAGGAGAAAAAAGATCGGTGAGAAGACTCGAGAGCTTGGGAAATTGGTTCCTGGTGGACCAAAGATGAACACAGCCGAGATGCTTCACACAGCTGCAAAGTATGTTAAGTAG 630 0.4032 MTLSIPNSETNAFHEEVAAPNLENLFPYCDESFYLSNPIFDNYIDPSGGFLYPSEVYPSCDPFVPFTYHNIFPTHENHNLLSCPKRQKCCYNEQLLQYSPQQELTTPTVPSNFLEGFIVPYDNTCSLQGEEVQPKIFYEIPQLDTYVDFGGQKKCENKINERIISSQSIAARERRKKIGEKTRELGKLVPGGPKMNTAEMLHTAAKYVK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00630 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 209 IPR036638 GO:0046983
Cca11g00630 209 Gene3D - 160 209 IPR036638 GO:0046983
Cca11g00630 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 209 IPR011598 GO:0046983
Cca11g00630 209 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 209 - -
Cca11g00630 209 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 11 209 - -
Cca11g00630 209 CDD bHLH_AtbHLH_like 167 209 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00630 Cca-Chr11 10308473 10309102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00630 5 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 32.524 8.93e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00630 - - ccaj:109817215 441.81