Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00629 ATGCCAGAAGAAGTATCAGCACCAAACCTCAACCACTTTTTTCCCTATTCAGATGAAAGTTTCTTCCTTTCAAACCCACTTTTTAATAACTATCTTGATCCAACAGGTGATTTTGTCTTCCCTTCAGAGATCTACGCTCCTTATGATCCCATCATTCCCCTCACTCATCGTGACATTTTCCCAACTCATGAAGATTACAATCTTCTACCATGTCCCAAACCCCAAAAGTACAGCTATGAAGCTGAACCGCAAGAGCTTACTACACCTTCAGTACCATCCACTTTCTTAGAAGGGTTTTTTGTGCCTTATGATGTTTGTTCCTCACGGCAAGGAGAAGAACAACAACATGAACTCTTCCATAAGGTTCCACAACATGATACTTGTGTGGATCTTCCTCGGTGTGAGAAGAAAGATAAAGAGAGAACCATATCTCCACAGAGCATAGCAGCAAGAGAAAGGAGAAGAAAGATCACTGAGAAGACCCAGGAACTTGGAAAATTGGTTCCCGGTGGACCAAAGATGAACACAGCTGAGATGCTTCATGCAGCTGCAAAGTATGTTAACTACCTTCAAGCACAAGTTAGGATGCTTGAACTCATGAAGTCTCTCGAGGAAGAAAAAGCAGCACCTCCTTCTGAAATTCTACACGATCTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTACACTGAGGAACTGTGTTTTGTTCCAAAAGAAATTGTCACCACTCTGACAAATGACGAGGATGTTAAATCAAGCCCTACCATCGTTGAGGATCTTAAACAGCTGATTGGGATAGACATCGAGACGAAAGTTAAGCAAGAATAA 828 0.4179 MPEEVSAPNLNHFFPYSDESFFLSNPLFNNYLDPTGDFVFPSEIYAPYDPIIPLTHRDIFPTHEDYNLLPCPKPQKYSYEAEPQELTTPSVPSTFLEGFFVPYDVCSSRQGEEQQHELFHKVPQHDTCVDLPRCEKKDKERTISPQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAAAKYVNYLQAQVRMLELMKSLEEEKAAPPSEILHDLVVSPFVQEKLYTEELCFVPKEIVTTLTNDEDVKSSPTIVEDLKQLIGIDIETKVKQE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00629 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 201 IPR036638 GO:0046983
Cca11g00629 275 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 259 - -
Cca11g00629 275 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 14 259 - -
Cca11g00629 275 SMART finulus 147 196 IPR011598 GO:0046983
Cca11g00629 275 Pfam Helix-loop-helix DNA-binding domain 149 191 IPR011598 GO:0046983
Cca11g00629 275 Gene3D - 137 209 IPR036638 GO:0046983
Cca11g00629 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00629 Cca-Chr11 10302302 10304000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00629 121 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 45.098 1.34e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00629 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00629 - - ccaj:109818800 379.022