Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00622 ATGAACAACACTCAGTCACAACAACACAAGAACCGCgaagaagaagaagaggaagaagaaAACCGGTTGCTCCAATCAGAATGCGAGACAATACCCTTGTCCTCATGCCGCTCGTCACCCACAAAGCGCGAACACGTATACGAACAACAAGAGGAAGAAGAAGACACGGACGCGGTGTATGCAGCCAAGGACAAGGTGCACATATTCGACTTGGAGTCCGCCGGCGAAGGCAGCGGGTCCACGGCGGTGCCGCCGGTCTCGTGGCGGAAGCTGTGGCTGTTCACGGGGCCGGGGCTGTTGATGAGTGTGGCGTTTCTGGACCCGGGGAACCTGGAAGGGGACCTTCAGGCTGGTGCCATTGCGGGGTACTCGTTGCTGTGGCTGCTGATGTGGTCGACGATCATGGGGCTGGTGATTCAGCTTCTGTCGGCGAGGCTTGGGGTGGCGACGGGGCGGCACCTGGCGGAGCTGTGCCGGGAGGAGTACTCGAAGTGGGCGAGGTTGGTGCTGTGGGTTCTGGCTGAGCTCGCTCTCATTGCTGCTGATATTCAGGAGGTTATTGGCAGTGCTATTGCCTTCAAGATTCTTAGCCATGGCCTTCTTCCTATTTGGGCTGGTGTGGTTATCACAGCCATGGATTGTTTCTTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGGTGTTTTCGCAGTTTTCATTGGAACTATGGGCTTTTCTTTTGCGTGGATGTTCTTTGATACAAAGCCCAATGAAGAAGAACTAATGATGGGTCTTTTGATCCCAAAAGTTAGTTCAAAAACACTTCGGCAGGCAGTGGAAATTGTGGGGTGTGTGATAACCCCACATAATGTGTTCCTCCATTCTGCATTAGTTCAATCAAGGGACATTGATATCCGTAACAAAGGGCAGGTTCAAGAGGCTCTCAACTACTACTCAATTGAGTCCTCAGTTGCACTTTTAGTCACATTGGTGATCAATCTATTTGTGATAACTGTTTTCGCTAGGGTGTTCTATGGTACAGAACAGGCCAAAGGCATAGGGTTGGTAAATGCTGGGCAATATCTTGAGGAGAGGTATGGAGGAGGCTTCTTTCCAATTCTCTATATATGGGGTATTGGTTTATTAGCAGCTGGCCAAAGTAGTACCATCACTGGCACATATGCAGGCCAGTTTATAACTGAGGGTTTCCTTAAGCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCTATTGTCCCAACAATGATTTGTGCTATTGTTTTCAATACATCAGAAGGTTCATTGGATACCTTGAATGAGTGGCTTAATGTGGTCCAAGCAATACAGATTCCTTTTGCACTTATTCCACTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGACCTTCAGAATAGGGCCTATAGTAGAGAGAGTGTCTTGGAGTGTGGCTGTGCTGGTGATATTGGTTTATGGATATATGCTACTAGATTTTTTCCTGGCTGAAGTGGATGGGCTGTTGTTTGGTTTTCTAGTATTCTTTTGTGCTGCAGCATGGATTTCATTTATCATATATTTGGTTCAACACAGTGGTGCCATTCCTTCAATGCTGTTGAGGTCCCCTAATTCCAAAGGCTTTTTCTCTCTTAATGGGAACTAA 1659 0.4684 MNNTQSQQHKNREEEEEEEENRLLQSECETIPLSSCRSSPTKREHVYEQQEEEEDTDAVYAAKDKVHIFDLESAGEGSGSTAVPPVSWRKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLVIQLLSARLGVATGRHLAELCREEYSKWARLVLWVLAELALIAADIQEVIGSAIAFKILSHGLLPIWAGVVITAMDCFFFLFLENYGVRKLEGVFAVFIGTMGFSFAWMFFDTKPNEEELMMGLLIPKVSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEALNYYSIESSVALLVTLVINLFVITVFARVFYGTEQAKGIGLVNAGQYLEERYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMICAIVFNTSEGSLDTLNEWLNVVQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVERVSWSVAVLVILVYGYMLLDFFLAEVDGLLFGFLVFFCAAAWISFIIYLVQHSGAIPSMLLRSPNSKGFFSLNGN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00622 552 Coils Coil 2 29 - -
Cca11g00622 552 MobiDBLite consensus disorder prediction 1 56 - -
Cca11g00622 552 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 25 552 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g00622 552 Pfam Natural resistance-associated macrophage protein 112 473 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g00622 552 Hamap Divalent metal cation transporter MntH [mntH]. 77 499 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g00622 552 PRINTS Natural resistance-associated macrophage protein signature 170 196 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g00622 552 PRINTS Natural resistance-associated macrophage protein signature 200 219 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g00622 552 PRINTS Natural resistance-associated macrophage protein signature 225 246 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g00622 552 PRINTS Natural resistance-associated macrophage protein signature 274 297 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g00622 552 PRINTS Natural resistance-associated macrophage protein signature 381 400 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g00622 552 PRINTS Natural resistance-associated macrophage protein signature 409 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g00622 552 PRINTS Natural resistance-associated macrophage protein signature 443 462 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca11g00622 552 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 25 552 - -
Cca11g00622 552 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 89 467 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00622 Cca-Chr11 10152935 10156388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00622 43 530 Inorganic Solute Cotransporters AT1G47240 69.960 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00622 K21398 - gmx:100801411 964.526