Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00616 ATGTGCAGCACCATCTTCATCTTCATCTTCATCCTCATTGCACCCTTCTTCCCCCAAACAACACCCACACCCATCCACAGAAGAATCCTCCACCAACCCCTTCTCCCCCAAGGAGCCTCACCCCCTCCCTCACAGCccccaaccccaccaccatccccaaacccttcacctccaaacccaaAGTACCCATTTTCAGCAACACCCAACACCAATGCCTCCACACCATTCTTCCCCACATACCCATCACCACCACCGCCACCCTCTCCCTCAGCCTATGCTTCCTTCCCAGCTAACATATCCTCCCTCATCCTCCCCCAATCCCCCAAATCCAAATCCTCCGCCAAACTCCTCGCCGTCGCCATCGCCTCCGTCGCCTCCGCCCTCGCCGTCGTCGCCCTCTCCGCCTTCGTATACTGCCGCCGCCGCCGCAAGCACTACTCCGCCGACGACAAAACCCTCAGATCCGACAGCAGCATCCGCCTCTTCCCCCGCGAGCCACCCCCCGCCGCCGGCGCTGCCCGGAAATCCAGAAACACTTCCTCCACCAGCTCTGAGTTTCTCTACCTCGGCACCATTGTTAACTCCCGCGGCGGTGGCGGTGTCGATGACCTTTCCGACCCACGCGCCGCCGCGTTGAACCCCCGGAAAATGGACTCGCCGGAGCTCCAGCCGCTGCCGCCGCTGGCGAGACAGGCCTCCAGGCTCCGCGAGGAGGCTACTCCGCAAGAGGACGATGAAGAGGAGTTCTACTCGCCGAGAGGGTCGTTGAACGGAAGAGAAGGCTCCGCCGGAACCGGATCGGGTTCCCGGCGACACGTGCCTTCGTCGTCAATGTCGTCGTCGCCGGAGCGGAGGGAATGCCAGTCGCCGTCGCTCTCGCCACTCTCTCTGTCGCCGAAGAAAAACCCAGATGGTGAATCTGTCCCGGGACACGTTGTGCTCGAAAAGACGGATTCTTTTGGCTCATCTAAGGAGAAAAACGAAGGTGGGTCGCCGAGACTGTCGAATGCTTCTTCTGTTGGGAAGTCGTCGGCGTTTTCTCTGCCGTCGCCTGAAAGAGGAATGAACTTGCATCACGGGTTGGATCAGTCTCCGACCATATCCGATGTTTCAGATCGGTATCGGCATTCTCCTCTTTCATCACTGCCTCTGTCGCCGACGTTGCTTTCGTCACCGGAGATAGAGTTGAACcctcagcctcagcctcagcctcagcctcaacctcaacctcagcctcagcctcagccACCACCTTCTCGGAAGCACTGGGAGATTCCTGACTTGTTGACCCCAATTAGCGAATCACCAAACTTTTCAGCTCCACAGAGGAAACAATGGGAAATTCCGGTTCTTTCGGTACCAATTGGTCAATCTAGTAGTGTTTTAGCCcctcctccgccacctccaccacctccaccgccactaccgGTGGTGCGGCAGCGGAAGCAGTGGGAGGTGCCGTTGCCTTCTCCGGTTACCCCGGTGGGTCAACCGGTTTCAAGGCCGCCGGCACTGACGCCTCCTTCTAGGCCTTTTGTGTTGCAAACCCCAAATACTAAGGTTTCTCCTGTTGAGTTGCCACCTGCTAGTTCTCAGAGTTTTGAGGAGAATCCTGAGGAGATGTCTAAACCTAAGTTGAAGCCTTTGCATTGGGACAAAGTGAGAGCCAGCTCTGATCGTGAGATGGTGTGGGATCAATTGAGGTCCAGTTCTTTTAAGTTGAATGAAGAGATGATTGAAACTTTGTTTGTAGTGAACACACCAAACCCAAAACCCAAGGATACTACACCTCGCTCAGTTCTTGCCCCTCAAAATCAGGAGGATAGGGTGCTGGATCCTAAAAAGTCTCAAAACATCGCTATCTTGTTAAGAGCACTTAATGTGACCATAGAAGAAGTGTGTGAAGCACTGTTAGAAGGTATTACTGATACACTTGGAACTGAACTACTTGAAAGCTTGCTAAAAATGGCACCAAGCAAGGAGGAAGAACGCAAATTGAAGGAACATAAAGATGATTCTCCAACCAAGCTTGGTCCTGCTGAGAAATTTTTGAAGGCAGTGCTTGATGTGCCTTTCGCATTTAAAAGGGTAGAAGCAATGCTTTACATAGCTAATTTTGAGTCAGAACTGGAGTATCTTAGGAAATCCTTTCAAACTTTGGAGACTGCCTGTGAGGAGCTGCGAAACAGTAGAATGTTCTTGAAGCTTCTAGAGGCCGTGCTCAAAACCGGGAACCGCATGAATGTGGGGACAAACCGTGGGGATGCACAGGCATTCAAGCTTGACACGCTTCTCAAGCTGGTTGATGTCAAAGGCGCAGACGGGAAAACCACTCTACTTCACTTCGTTGTACAAGAAATCATCAGAACCGAAGGTGCTCGTCTCTCAGGTACCACCAACCAAGCCCCAAATGTGAATTCAAACGATGATGCCAAGTGCAGACGGCTCGGCCTGCAAGTGGTCTCCAGTCTAAGTTCAGATCTAGCAAACGTGAAGAAGGCCGCCGTGATGGACTCGGAAGTCCTCAGCAGCGAGGTCTCAAAACTCTCCAAAGGAATTGCACACATTGCAGAGGTTGTGCAGTTGAATGAAAATGCAGGGTCAGATGAGAGCAGCCAGAAGTTCAAAGAGTCAATGAACAAGTTCATGAAGATGGCTGAGGAGGAGATTCTAAAAGTCCAAGCCCAAGAAAGTGTTGCTCTATCACTTGTGAAGGAGATCACAGAGTATTTCCATGGGAACTTGTCAAAGGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTGAGAGACTTCTTAACAGTTCTTGATAGGGTGTGCAAAGAAGTTGGTATGATAAATGAGAAAACCATGGTTAGTTCTGCACATAGATTCCCTGTCCCAGTGAACCCTATGCTTCCACAACCACTTCCTGGACTCATTGGAAAGAGACATTACAGTTCCTCAGATGATGACAGTCCTTCACCTTAG 2970 0.4912 MCSTIFIFIFILIAPFFPQTTPTPIHRRILHQPLLPQGASPPPSQPPTPPPSPNPSPPNPKYPFSATPNTNASTPFFPTYPSPPPPPSPSAYASFPANISSLILPQSPKSKSSAKLLAVAIASVASALAVVALSAFVYCRRRRKHYSADDKTLRSDSSIRLFPREPPPAAGAARKSRNTSSTSSEFLYLGTIVNSRGGGGVDDLSDPRAAALNPRKMDSPELQPLPPLARQASRLREEATPQEDDEEEFYSPRGSLNGREGSAGTGSGSRRHVPSSSMSSSPERRECQSPSLSPLSLSPKKNPDGESVPGHVVLEKTDSFGSSKEKNEGGSPRLSNASSVGKSSAFSLPSPERGMNLHHGLDQSPTISDVSDRYRHSPLSSLPLSPTLLSSPEIELNPQPQPQPQPQPQPQPQPQPPPSRKHWEIPDLLTPISESPNFSAPQRKQWEIPVLSVPIGQSSSVLAPPPPPPPPPPPLPVVRQRKQWEVPLPSPVTPVGQPVSRPPALTPPSRPFVLQTPNTKVSPVELPPASSQSFEENPEEMSKPKLKPLHWDKVRASSDREMVWDQLRSSSFKLNEEMIETLFVVNTPNPKPKDTTPRSVLAPQNQEDRVLDPKKSQNIAILLRALNVTIEEVCEALLEGITDTLGTELLESLLKMAPSKEEERKLKEHKDDSPTKLGPAEKFLKAVLDVPFAFKRVEAMLYIANFESELEYLRKSFQTLETACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAQAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARLSGTTNQAPNVNSNDDAKCRRLGLQVVSSLSSDLANVKKAAVMDSEVLSSEVSKLSKGIAHIAEVVQLNENAGSDESSQKFKESMNKFMKMAEEEILKVQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVGMINEKTMVSSAHRFPVPVNPMLPQPLPGLIGKRHYSSSDDDSPSP 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00616 989 MobiDBLite consensus disorder prediction 491 510 - -
Cca11g00616 989 MobiDBLite consensus disorder prediction 34 88 - -
Cca11g00616 989 MobiDBLite consensus disorder prediction 36 64 - -
Cca11g00616 989 MobiDBLite consensus disorder prediction 147 180 - -
Cca11g00616 989 MobiDBLite consensus disorder prediction 361 396 - -
Cca11g00616 989 MobiDBLite consensus disorder prediction 236 253 - -
Cca11g00616 989 MobiDBLite consensus disorder prediction 460 478 - -
Cca11g00616 989 PANTHER FORMIN-LIKE PROTEIN 1 5 316 - -
Cca11g00616 989 Pfam Formin Homology 2 Domain 540 936 IPR015425 -
Cca11g00616 989 SUPERFAMILY Formin homology 2 domain (FH2 domain) 464 949 - -
Cca11g00616 989 Gene3D Formin, FH2 domain 530 946 IPR042201 -
Cca11g00616 989 MobiDBLite consensus disorder prediction 397 421 - -
Cca11g00616 989 PANTHER FORMIN-LIKE PROTEIN 1 389 989 - -
Cca11g00616 989 MobiDBLite consensus disorder prediction 197 443 - -
Cca11g00616 989 ProSiteProfiles Formin homology-2 (FH2) domain profile. 536 962 IPR015425 -
Cca11g00616 989 SMART it6_source 536 951 IPR015425 -
Cca11g00616 989 PANTHER FORMIN-RELATED 389 989 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca11g00616 989 MobiDBLite consensus disorder prediction 457 543 - -
Cca11g00616 989 MobiDBLite consensus disorder prediction 258 300 - -
Cca11g00616 989 MobiDBLite consensus disorder prediction 511 537 - -
Cca11g00616 989 MobiDBLite consensus disorder prediction 324 350 - -
Cca11g00616 989 PANTHER FORMIN-RELATED 5 316 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00616 Cca-Chr11 10069817 10074701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00616 490 978 FH2 protein (formin) Gene Family AT3G25500 76.065 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00616 - - gmx:100802678 1163.67