Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00608 ATGGGAGAGAATATGAAGTGTGAACAAGTTGGTCTCATTGATGAGTTAATGCAAGGGAAGAAGCTAGCAAAGCAGCTATGTGACTATCTAGTCtcatcatcatcatcatctcatGAAACAAATGAAGTCTTGATTCAGAAAATACTTTCCACCTATGAGAAAGTACTTGCCATGCTGAATCCTAATGTAGGAGAAAATAAGGCAAACAATGGTAGCATCATGGATTCCGCTTGTTCTTTCGCAAATGGTAGCCCCAGAAGTGAGGTCATGGAGCCGGAGGTTAAGCACAAAGATGTCTTCAAGAAAAGAAAGACCACTCCAAAATGGACAGAGCAAGTGAAGGTCTGCTTGGGAACATCACTGGATGATGGCTATAGCTGGAGAAAATATGGACAGAAGGATATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGGTGCACATATAGAAATGTACAAGGATGTTTGGCTACTAAGCAAGTGCAAAAGTCAGATGAGGACCCAATGATATGTGAGATAACCTACAAAGGAAGACACACATGCACCCAAGCAAGTCACTTAAACAAGGCTGTAGTAGCACCCACATCAAAAACAAATATGGGTTTGGGAGAAAACAAGCACCACAACCATCAAAAGAATCAACCACAAGAAGAGAAAATAGAACCCCAAGAGACAATTTTCTCTTTTGGATCATCAGGTCTTGAAGTTAAAACAGAGGACTTGGACCACAAGAAGGACATATTCCCATCATTTTGCTTCTCTTCTCCATCAATAGGGTCTGAAAAAGAGGACAACAACATGTTCTCCTACGCCATGATTGAGAACAACAACTTAATGGAAAGCTTTTTAATAGCTCCAACAACTTCAGAAGAACCAAACATTTTCTGTTTGTCACCGTGCCACTGGGGTAGTAGCACTGGACTAGGCCAAAGTATGCATGCCTCAGAGTCTGATATCACTGATATAGTTTCAGCTCCAACTTCAGTCACCAATTCCCCAATAATGGATTTGGATTTCATCTTAGCAAAGATAGATTTCGACACAGATTTCCCTATCAACGCCCCAGAACTTTGCAGTTGA 1080 0.4028 MGENMKCEQVGLIDELMQGKKLAKQLCDYLVSSSSSSHETNEVLIQKILSTYEKVLAMLNPNVGENKANNGSIMDSACSFANGSPRSEVMEPEVKHKDVFKKRKTTPKWTEQVKVCLGTSLDDGYSWRKYGQKDILGAKFPRGYYRCTYRNVQGCLATKQVQKSDEDPMICEITYKGRHTCTQASHLNKAVVAPTSKTNMGLGENKHHNHQKNQPQEEKIEPQETIFSFGSSGLEVKTEDLDHKKDIFPSFCFSSPSIGSEKEDNNMFSYAMIENNNLMESFLIAPTTSEEPNIFCLSPCHWGSSTGLGQSMHASESDITDIVSAPTSVTNSPIMDLDFILAKIDFDTDFPINAPELCS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00608 359 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 356 IPR044810 GO:0003700
Cca11g00608 359 Gene3D WRKY domain 101 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g00608 359 SUPERFAMILY WRKY DNA-binding domain 120 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g00608 359 ProSiteProfiles WRKY domain profile. 121 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g00608 359 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 1 356 - -
Cca11g00608 359 SMART WRKY_cls 121 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g00608 359 Pfam WRKY DNA -binding domain 122 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00608 Cca-Chr11 9857490 9860278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00608 5 248 WRKY Transcription Factor Family AT4G23810 36.972 1.40e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca11g00608 WRKY 7.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00608 - - gmx:100170747 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00608 11 9857490 9860278 Cca06g01849 06 33886761 33887991 ECH
Cca11g00608 11 9857490 9860278 Cca11g00608 11 9857490 9860278 ECH
Cca11g00608 11 9857490 9860278 Cca03g03140 03 52839418 52841144 ECH
Cca06g01849 06 33886761 33887991 Cca11g00608 11 9857490 9860278 ECH
Cca03g03140 03 52839418 52841144 Cca11g00608 11 9857490 9860278 PCT