Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00598 ATGCCCGCGCAGCTCTTATCTCAGCTCCGTCTTCTCCAACCCCTCCTTCCCATGAAGCCCCTCCTCTCTCGCACCTTCTTCTTCCCCTCCTCCAAGTTCCTCCGAAACGCACCGTTTCGCCCTCGCGCCTTCTCCGCCCGCCCCCATCCCAGGGACAAGCTCCCCCTCCGCCCCTCCAAGAGCCTCGTCGAGGACGAGGCCGACCTCAGCGACTGGCTCGACGACCTccgctccgcccgccccgaccccttcgccactcgcctcgaccgccgcgccgacgacgacggcgacgaagaGCAGCGCGAGTTCCGGCCCCCGCGGAGGAACGATAGGGTTTCCACGCTGGGGAAGAGGAGGGGTGAGGGCTTGAGAAGGGGAAGACAGGATGGCGGTGGCGCCAGGAGGAAGTTTCAGCCGAGGAGTGAGGATGAGGATAATGTTGGTGGAAGGAACTTGAAGAGGGGTGGCGTTGGAGAGTTTCTTACTGAGgatgaagatgaagatgaagatgaagaGAGTGAGGATGAAGAGATTTTGAACAAGAGTAGAACCGCTTTGTTTGGCCAACCAAGCGGTTTCGACCGGAGAACCGCTGAACCGGTTCCCAGACCCTCTTCCCCTGGAGGATCTGATTCTTATTTGAGTGACACCAGATTTGACCAATGTTCAATCTCCCCACTGTCATTAAAAGGAGTCAAAGATGCTGGATATGAGAAAATGACCGTTGTGCAGGAGGCTACTCTTCCGGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCGAAGACAGGCACTGGGAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGCTGTGGCAAAGTTACCTCCAAGTGATCGTGATCAAAGGCGGCCACCAATTCATGTTCTTGTCATATGCCCAACTCGAGAGCTAGCAAGTCAAGCTGCTGCTGAGGCCAATAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGATCATATCGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGGGTGAAAGTTTTGGTGCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATTGAGAAAATAATTGCTGCAGTCCCTAAACAAAGACAGAGTCTTATGTTTTCTGCCACCATTCCAGAAGAGGTGCGTCAAGTATGTCATATTGCCTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGTACCGAGGAGACACATTCTCAGGTCCGCCAGAAGCATTTAGTTGCCCCATTGGACAAGCATTTCCCTTTATTATATGCTCTTCTGAAGGATCACATTGCAGATGACGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTTACTAGGCTTGTTGCTGACCTTCTTGGTGAGTTGAAGTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTAACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTACCATCAGATAGAGAACAATACATACATCGACTGGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGACTTCTTTTTACATTCCGTAAAAGATTTGCCTATTGAGAAAGGTTCAGAACCTTCGGTTGATCCTGAAACTAAGAAAAAGGTGGAAAGAGCTCTATCCCATGTGGATATGAAGAACAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGCGCGTGACAAGTATAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAAGCATGGGCCTTGATAACCCTCCAGCTATTCCTAAGCTAGTCCTTGGCAAGATGGGCCTTAGGAATATCCCTGGTTTACGTGCCAAATAG 2058 0.4621 MPAQLLSQLRLLQPLLPMKPLLSRTFFFPSSKFLRNAPFRPRAFSARPHPRDKLPLRPSKSLVEDEADLSDWLDDLRSARPDPFATRLDRRADDDGDEEQREFRPPRRNDRVSTLGKRRGEGLRRGRQDGGGARRKFQPRSEDEDNVGGRNLKRGGVGEFLTEDEDEDEDEESEDEEILNKSRTALFGQPSGFDRRTAEPVPRPSSPGGSDSYLSDTRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEAVAKLPPSDRDQRRPPIHVLVICPTRELASQAAAEANKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQSLMFSATIPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQKHLVAPLDKHFPLLYALLKDHIADDVDYKVLVFCTTAMVTRLVADLLGELKLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPSDREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLHSVKDLPIEKGSEPSVDPETKKKVERALSHVDMKNKEAAYQAWLGYYNSNKKVARDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00598 685 PANTHER RNA HELICASE 28 80 - -
Cca11g00598 685 PANTHER RNA HELICASE 178 683 - -
Cca11g00598 685 Gene3D - 440 663 IPR027417 -
Cca11g00598 685 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 465 616 IPR001650 -
Cca11g00598 685 CDD SF2_C_DEAD 446 579 - -
Cca11g00598 685 MobiDBLite consensus disorder prediction 84 150 - -
Cca11g00598 685 SMART helicmild6 489 570 IPR001650 -
Cca11g00598 685 SMART ultradead3 236 449 IPR014001 -
Cca11g00598 685 MobiDBLite consensus disorder prediction 161 176 - -
Cca11g00598 685 Pfam Helicase conserved C-terminal domain 462 570 IPR001650 -
Cca11g00598 685 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 217 245 IPR014014 GO:0003724
Cca11g00598 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 586 IPR027417 -
Cca11g00598 685 MobiDBLite consensus disorder prediction 84 217 - -
Cca11g00598 685 Gene3D - 189 432 IPR027417 -
Cca11g00598 685 CDD DEADc_MSS116 224 433 - -
Cca11g00598 685 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 178 683 - -
Cca11g00598 685 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 28 80 - -
Cca11g00598 685 MobiDBLite consensus disorder prediction 45 61 - -
Cca11g00598 685 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 248 431 IPR014001 -
Cca11g00598 685 MobiDBLite consensus disorder prediction 42 61 - -
Cca11g00598 685 Pfam DEAD/DEAH box helicase 242 419 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00598 Cca-Chr11 9703268 9709758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00598 217 576 Eukaryotic Initiation Factors Gene Family AT3G19760 30.352 8.88e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00598 - - gmx:100795739 1074.69