Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00597 ATGGGATACTTATCACCACCATCAACGCAGTCAAACATGAAATCAATCTCACCTACAAAGGATGAGAATGGAGAATTGTGTTATGCTTCCTGGCTAGGAAAGCATCCTTCTGCCTTGGACAATTTTGAGGAAGTGATGAGCATAGCTGAAGAGAAAGAGATTGTTGTGTTTTTGGACTATGATGGAACACTCTCACCTATAGTAGATGACCCTGATAAGGCTTACATGAGTGATGCTATGCGCGCAGCTGTTCGTGAAGTTGCTTATTGCTTTCCCACTGCCATTGTTAGTGGAAGGTGCAAAGATAAGGTATATGAATTTGTGAAGTTAAGGAATGTTTATTATGCTGGAAGTCATGGCATGGATATATCAACTCCATTAGGATCTTCGAAATGTGAAGATCAGAAGCATCAGATAAAGGCTTTTGATGAAAAGGGTAATGATGTTGTTCACTTTCATCCAGCAAAAGAATTTTTACCAACAATCCAAGAGATAATTAAGGTTTTGAAAGAAAACACAGCAAGAATAGAGGGCTCTATGATTGAGGATAATATGTTCTGTGTCACTGTACACTACCGGCGTGTGAAAAATGATGAGGACGTTGGTGTTCTAAGAGAAATGGTGGAGTCTATTATGAAAGCTTACCCCAGTTTTCACATATCAAGAGGAAGAAAGGTTATGGAGATACGTCCAAATGTAAACTGGGACAAAGGTCGTGCTCTTAGGTATTTGCTTGAATCTCTTCGCTTTGACAACTTTAACAATGTTCTTCCAATGTACCTTGGAGATGACAGAACAGATGAAGATGCTTTCAAGGTTATAAGACACATTGGACGTGGTTTTCCAATTATTGTTTCTTCAGTTGCAAAGGAGACTGAGGCTTCATATTCCCTGCGTGACCCCACTGATGTGCTGACTTTCTTGATTCGTTTAGCAAAATGGAAGAAGAACCTGTTACAGAAAACTAATTAA 972 0.393 MGYLSPPSTQSNMKSISPTKDENGELCYASWLGKHPSALDNFEEVMSIAEEKEIVVFLDYDGTLSPIVDDPDKAYMSDAMRAAVREVAYCFPTAIVSGRCKDKVYEFVKLRNVYYAGSHGMDISTPLGSSKCEDQKHQIKAFDEKGNDVVHFHPAKEFLPTIQEIIKVLKENTARIEGSMIEDNMFCVTVHYRRVKNDEDVGVLREMVESIMKAYPSFHISRGRKVMEIRPNVNWDKGRALRYLLESLRFDNFNNVLPMYLGDDRTDEDAFKVIRHIGRGFPIIVSSVAKETEASYSLRDPTDVLTFLIRLAKWKKNLLQKTN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00597 323 Pfam Trehalose-phosphatase 57 301 IPR003337 GO:0003824|GO:0005992
Cca11g00597 323 SUPERFAMILY HAD-like 55 317 IPR036412 -
Cca11g00597 323 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 56 278 IPR006379 -
Cca11g00597 323 CDD HAD_TPP 55 304 - -
Cca11g00597 323 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 21 322 - -
Cca11g00597 323 Gene3D - 152 323 IPR023214 -
Cca11g00597 323 Gene3D - 54 151 IPR023214 -
Cca11g00597 323 TIGRFAM T6PP: trehalose-phosphatase 53 312 IPR003337 GO:0003824|GO:0005992
Cca11g00597 323 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 21 322 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00597 Cca-Chr11 9678028 9681342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00597 56 312 Trehalose Biosynthesis Gene Families AT1G23870 25.275 1.47e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00597 K01087 - gmx:100799466 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00597 11 9678028 9681342 Cca11g00597 11 9678028 9681342 ECH