Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00595 ATGACTACAAAGGGGAAGAAGTTTGTGAGGTTTAAGGATTGGAAGTCACTTTCATCTTCAAGTATTGAGCACAATGATTCTAATGACGGATTTCACAAAAGAAAAGTTCAATCAAGCGTAAGTTCTGTCATCGATGGACCAATAAAGAAATTGTCTTGCAAGATCAATGTTCTTGATCCACAGGGGCCAACACTTCAGAAGTGGAACAAAATTTTTGTAATCACGTGTGTGATGGCAATCTCTGTGGACCCTCTTTTCTTGTACATTCCAGTGATTGATGTCCAGAAAAAATGCCTTGATTTGGATGGAGCACTGAAGATCACTGCCAGTGTTCTCCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGAACTGGGTTTATTGCACCTTCCTCTCGTGTATTTGGAAGGGGTGAGCTAGTTAATGATCCTTGGGCCATTGTGATGAGATACTTGAGTTCTTACTTCATCATTGACATTCTATCAATTATCCCACTTCCTCAGATGGTCATTTTAGCTATCATCCCAGTCCGAGAATGCTCATCTCCTTATGTGGGAAAGGACTTCTTGAAGTATACGGTAATATCCCAGTACGTTCCAAGACTTTTGAGGATCTACCCCTTATTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCAGCTTACAATCTTTTTCTCTATATGCTAGCAAGTCATGTAGTTGGAGCATTCTGGTATCTATTTTCGGTTGAATCAAGGTTGCGGTGCTGGCGCAGGGAGTTGCAGAATGCTAAGTTCTTTCATGAATCCTACCTTAGCTGTGGACGTGACAATCCTTATGTTCAGTCACTCCTTAACTCTTCTTGCCCTATAAAAGAAATAGAACACACTGATGACACGGAATCCTTCAATTTTGGAATGTTTATAGAAGCTCTGAAGTATCGCGTGGTAGAATCAGCTACATATTTTCATCACAAGTTCTTCTACTGCTTTTGGTGGGGTTTACGCAGTTTAAGTTCTGTTGGGCAAGGTCTCCAGACAAGTACTTACGTTGGGGAGATAATCTTTGCTATCTTCATTGCTGTCTTTGGATTGGTTCTATTTGCATCACTTATTGGAAACATGCAGAAATATCTGCAATCTACCACTGTCAGAGTAGAAGAGATGAGAATCAAAAGACGAGATGCAGAACTGTGGATGTCACACCGGATGCTACCTGAATTACTAAAGCAAAGAATTAGACGGTACGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAAGAGGAGACATTAATTCGCAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGTCATCTTTGCTTAGATCTTCTTAGAAAAGTGCCGATGTTTGAGGACATGGATAATCAGTTGTTGGATGCACTGTGTGATAGACTGAAGCCAGTCCTTTACACAGAGAGAAGTTACATAGTTCGTGAAGGGGATCCGGTTGATGAAATGCTGTTCATCATGCGTGGAAAACTTGCTACTGCCACAACAAACGGTGGAAGAACTGGTTTCTTCAACTCCGCTGAGATCAAGGCGGGTGATTTCTGCGGAGAAGAGCTTCTGACATGGGCCTTGGATCCTAACTCCTCCTCAAACCTACCCATTTCAACAAGAACAGTGGAAACTATATCAGAAGTGGAAGCCTTTGCCCTCATGCCCGAAGACTTGAAGTGTGTTGCTTCCCAGTTTCGTCGTCTTATAAACAGCAAACAACTCCAACACACTTTCAGGTTCTATTCCCTGCAATGGAGGACATGGGGTGCATGTTTCATACAAGCAGCATGGCGCAGATACCGAAAAAAGAAGGCTGAGAGGGCATTACGTGAAGCAGAAGAGAGGATACAAGCCATGGAAAACGAGGAAGGGTCCTCACCTAGCTTTGCAGCGACAGTGTATGCATCAAGGTTTGCATCAAGTGCATTGCGGCACTTGCGAAGTGGGAAACGCAACAGAGTGCCACAGCCTCAGAGATTGCTACCCCTGATGCCTCAGAAGCCAGCTGAGCCAGATTTCACTGCTCAGACGAACTAG 2079 0.4319 MTTKGKKFVRFKDWKSLSSSSIEHNDSNDGFHKRKVQSSVSSVIDGPIKKLSCKINVLDPQGPTLQKWNKIFVITCVMAISVDPLFLYIPVIDVQKKCLDLDGALKITASVLRTFFDLFYILHIIFQFRTGFIAPSSRVFGRGELVNDPWAIVMRYLSSYFIIDILSIIPLPQMVILAIIPVRECSSPYVGKDFLKYTVISQYVPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESRLRCWRRELQNAKFFHESYLSCGRDNPYVQSLLNSSCPIKEIEHTDDTESFNFGMFIEALKYRVVESATYFHHKFFYCFWWGLRSLSSVGQGLQTSTYVGEIIFAIFIAVFGLVLFASLIGNMQKYLQSTTVRVEEMRIKRRDAELWMSHRMLPELLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLRKVPMFEDMDNQLLDALCDRLKPVLYTERSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSAEIKAGDFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALMPEDLKCVASQFRRLINSKQLQHTFRFYSLQWRTWGACFIQAAWRRYRKKKAERALREAEERIQAMENEEGSSPSFAATVYASRFASSALRHLRSGKRNRVPQPQRLLPLMPQKPAEPDFTAQTN 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00595 692 Coils Coil 616 636 - -
Cca11g00595 692 Gene3D Helix hairpin bin 390 454 - -
Cca11g00595 692 SUPERFAMILY cAMP-binding domain-like 392 579 IPR018490 -
Cca11g00595 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 690 - -
Cca11g00595 692 Gene3D - 70 387 - -
Cca11g00595 692 ProSiteProfiles cAMP/cGMP binding motif profile. 463 547 IPR000595 -
Cca11g00595 692 PRINTS EAG/ELK/ERG potassium channel family signature 124 133 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g00595 692 PRINTS EAG/ELK/ERG potassium channel family signature 241 251 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g00595 692 PRINTS EAG/ELK/ERG potassium channel family signature 332 349 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g00595 692 PRINTS EAG/ELK/ERG potassium channel family signature 358 369 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g00595 692 PRINTS EAG/ELK/ERG potassium channel family signature 376 385 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g00595 692 PRINTS EAG/ELK/ERG potassium channel family signature 426 433 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g00595 692 SMART cnmp_10 463 594 IPR000595 -
Cca11g00595 692 Gene3D Jelly Rolls 461 581 IPR014710 -
Cca11g00595 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 690 - -
Cca11g00595 692 CDD CAP_ED 463 595 IPR000595 -
Cca11g00595 692 Pfam Ion transport protein 68 391 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca11g00595 692 SUPERFAMILY Voltage-gated potassium channels 59 385 - -
Cca11g00595 692 MobiDBLite consensus disorder prediction 660 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00595 Cca-Chr11 9597118 9602646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00595 1 689 Ion Channels AT5G53130 62.691 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00595 K05391 - gmx:100795201 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00595 11 9597118 9602646 Cca11g00595 11 9597118 9602646 ECH
Cca03g03147 03 52900583 52907652 Cca11g00595 11 9597118 9602646 PCT