Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00585 ATGGGCATCTTGGAAGTCGTTTTTCCCTTCTTCATCTTTCCTTTCATATATGCCTCAAATGATTGCCAATTTTCTTTCTGTGGCAACAATAGCATTATTCGTTTTCCCTTTCAAGTAGCTGATGAGCAATATCCTTATTGTGGCTATCCTGGTTTTAACTTAATTTGTACGAATAATAGCAAAACAGTGCTAAAACTTCCTTACTCTGGTGAGTTCTATGTGCGCAACATTAACTACCTCACCCAAAAGATACAAGTCTACGACCCTGATGATTGCCTCGCCAAACGTCTTCTGAGCCTCAATGTCTCCGGTTCTCCTTTTATTCCCATTTTCACTCGTAACTACACCATCTTAAGCTGCCCATTTCAGAACGCAGGGTCACAATTCATTCCCATTGACTGCCTCAGCAATTCCACAAATTTTGTATCAGCTGTCTCTTCACTAAACTTGACCAATCCATTGCCTGAGTCTTGCCATGTTATTACAAGGCTTTCGGCCTCAGTTGCAAGGCCAGAGCAGCAGTATGAGCAGAATCTCAGAGACGAGCTTAGTGAAGATCTTCGATTAACATGGGATAGACCTAACTGCAGTTATTGTGAATCACGACAGCAATTGTGTGGGGTTGATCGAAACAATAATAATCAGCTTTTATGTTTCTCTTACCAAACAGGAAGTTCACGACAAGGTGGATCCCAAGTTTTTAGAATCATCACATTATGCATAGCTGGACCTGCAGCCGTCTTTGCAATTGTGATGGCATGCTGCGTGTGCTACAAGGACAGACTAGTGAACAACAATGGCAACAACGCTATTGCGAGGTCTGCAGGAACTACAATATCACCATTACCGCAAGAAGAGAGTGTGAGTAGGGGTCTGGACGAGTGGACGATTGAGTCTTACGAGAAGGTAGTGGTTGGAGAGAGTAGACGAGTTCCTGGACCGAACGATGGATGCTGTTGGATATGCTTGTCGGAGTACAATAGCAAAGAGACAGTAAGATGCATCCCTGAATGCAACCACTGCTTCCACGCTCACTGCATAGACGAGTGGCTTCGCATCAACTCCACATGCCCAGTTTGTCGCAACTCTCCCTCACCTTCTCCTCTTCATCTTACTTCTTGA 1122 0.4412 MGILEVVFPFFIFPFIYASNDCQFSFCGNNSIIRFPFQVADEQYPYCGYPGFNLICTNNSKTVLKLPYSGEFYVRNINYLTQKIQVYDPDDCLAKRLLSLNVSGSPFIPIFTRNYTILSCPFQNAGSQFIPIDCLSNSTNFVSAVSSLNLTNPLPESCHVITRLSASVARPEQQYEQNLRDELSEDLRLTWDRPNCSYCESRQQLCGVDRNNNNQLLCFSYQTGSSRQGGSQVFRIITLCIAGPAAVFAIVMACCVCYKDRLVNNNGNNAIARSAGTTISPLPQEESVSRGLDEWTIESYEKVVVGESRRVPGPNDGCCWICLSEYNSKETVRCIPECNHCFHAHCIDEWLRINSTCPVCRNSPSPSPLHLTS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00585 373 Pfam Ring finger domain 319 361 IPR001841 -
Cca11g00585 373 SMART ring_2 319 360 IPR001841 -
Cca11g00585 373 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 369 - -
Cca11g00585 373 Pfam Wall-associated receptor kinase C-terminal 151 220 IPR032872 -
Cca11g00585 373 ProSiteProfiles Zinc finger RING-type profile. 319 361 IPR001841 -
Cca11g00585 373 CDD RING-H2_EL5_like 319 361 - -
Cca11g00585 373 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 5 369 - -
Cca11g00585 373 Pfam Wall-associated receptor kinase galacturonan-binding 22 88 IPR025287 GO:0030247
Cca11g00585 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 366 IPR013083 -
Cca11g00585 373 SUPERFAMILY RING/U-box 318 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00585 Cca-Chr11 9261199 9263916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00585 24 366 C3H Transcription Factor Family AT2G25410 44.886 1.48e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00585 - - gmx:100794143 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00585 11 9261199 9263916 Cca11g00585 11 9261199 9263916 ECH
Cca03g03149 03 52913309 52917038 Cca11g00585 11 9261199 9263916 PCT