Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g00583 | ATGATAGTTAAGCGGACGATGAAAACCGAAACGCCGAACTTTAAACGGTGTAAGATGGAGGAGGCCGATTCCGGGAATGCGATTCCGAAGAAGCGTAGGGTGAACGGGTTTTACTCGCTGGGAATGCCCGGCGACGCTGAATATTTCAGCAGTGGTTCTGGTTCTTGGAGCAGTGAGGGATCGTATTGGGGTGGTGGTGAGGTTCAGTCCAATTCGAATTTGGTGCCGTTTAATCGGAAAACGGCGAAGGAGGCACGCCGGCCGCCGCTGCTGCGGTCCTCACGCGGGCGCCTCCAGAAGCTTCCGTCGCGGTTCAATGATTCGGTTCTTGACACGTGGAAGAAAGCGGAGGAGGAGAACGAGGAAGGAGAGTCGTGCTTTGAAGATGACAAGAGTTTTGTGGAGGATGGTAGGGGTGGCATTGAGAAGTGTGACAGTGTGTGTTATTCGTCTAGGACTGTTAAGGCTGAAAGCAATACGTCTGGTCTTAGTTTTGAGGGTGTGGACCAAAAGCCCAATGGTGGGAAGAGGAAAGAGGTTTACAAGCCTGGGGATTTTGCTTTGGGGGATATAGTTTGGGCTAAGTGTGGGAAGAGGTATCCGGCTTGGCCTGCTGTGGTCATTGATCCTGTCTTGGAGGCTCCGGAGTCTGTTCTTAGCTGTTGTGTTCCGGGTTCGCTTTGCGTGATGTTTTTCGGTTATTCGAAAAATGGAACTCAAAGGGACTATGCGTGGGTGAAACAGGGAATGGTGTTTCCCTTCTCGGAATTCATGGACAGGTTTCAGGGGCAGACCCGGTTGTACAAGAGCAAACCGAGTGACTTTCGCATGGCACTGGAGGAGGCAATGCTGGCAGAAGATGGTATTCTCGAATCACATTTGGGAGGAGAGGAAGTAGCTGATGCAGAAGCTCATCCTGATGGACTTATGGAGGCCACACGTTCATATGTTGACGATGAATATTTTGGTCTGGATCAGGATACAAGGTATTGTGCTGGCTGTGGTATGTTGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAACTGTACACCCCAATTTTATTGCAAACATTGTGCTAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAGGATTTGGCATCATTCAGATGGTGGGAATTGGGTGTGTTGTGATGGTTGTAATGTGTGGGTTCATGCTGAGTGTGATAAAATTTCCAGCAGACTTTTCAAGGATCTGGAAAATACAGATTACTATTGTCCAGAGTGCAAAGAAAAATTCAATTGTAAATTACCAGCATCACAAACACACAAGGAAAAAATCAAATCAATAGAGAGTAGCCAAAAACCTATGATACCTGAGACCGTATTGGTGGTGTGCAATGGCATGGAAGGAATTTACATCCCAAAGCTTCATCTAGTCATGTGCAAGTGTGGCTCTTGTGGTTCAAGGAAGCAGACACTTAGTGAATGGGAAAAGCATACAGGTTGCAGAGCGAAAAAATGGAAACATAGTGTGAAAGTGAAAAGCACAATGCAACCACTGGAAAAATGGATGGCAGAACACATTCCACTTGAGGGAATACCCCAGCAGTTAGATCAACAGCAGGTGCTGGCTTTTTTGCAAGAGAAGTACGAGCCAGTTAATGCAAAATGGACAACCGAAAGATGTGCTGTTTGCAGATGGGTTGAAGACTGGGAAGATAACAAAATGATTATTTGTAACAGATGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTAAAGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGACGTTGAGAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCGACCTCAGGTTGTTTTCCAAAACCATGAAGCCATGGAACCTGCCAGAGGAATCCTCAAAATCCCTCCTAATTCTTTTGTGAAGACTTGTGTGATCTGTAAACAGAGCCACGGTTCCTGTATAACTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCATCAAGGGCTGGATATACAATGGAATTGCATTCCATGGAGAAGAATGGGACTCAAATAACAAAGAAGCTAATATATTGTGCAATCCACAGGGTCCCAAATCCAGATTCAGTACTGGTTGTACACACACCGCTGGGGGTTTTCTCTCCCAGAACTTCACTTCAAAATCAGAAGGGATGCTTCAGGGGATCAAGGCTAATTTCATCAAAAAATATGGAGCTTAATGAATCTTCAATCACTGTAAATGATATGGTTGAGCCGCTGTCTGCTGCCAGATGTCGTGTGTTCCGAAGGTCTCCTAATAAGAGGGCAGATGTGCCAATAATTCACTTGCTGAGGGGACCCAGCCTTCATTCTTTGGGTGCAATAACTCAGTTGAATCACTATAAGGATGCTGAAGAATCTAAAGTATTCACTTCTTTCAAGGAACGTCTTCACCATTTATGGAAAACGGAAAAACTTAGAGTTTGCTTTGGTAAATCGGGCATTCATGGATGGGGCCTTTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGTGTGCAGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAATACCGTTCAGAAGGCAAAGATTGCTATCTGTTCAAGATCAGTGAGGAAGTGGTAGTTGATGCAACGAACAGTGGCAATATAGCACGTTTGATAAATCATTCTTGCATGCCGAACTGCTATGCAAGGATCATGAGTTTGGGGGATGAGGAGAGCCGGATAGTTCTTATTGCCAAGACCAATGTTTCTGCTGGTGAAGAATTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAATTGAAAGTTCCCTGCCTTTGCAAAGCCCCCAATTGTAGGAGATTTATGAATTAG | 2958 | 0.4479 | MIVKRTMKTETPNFKRCKMEEADSGNAIPKKRRVNGFYSLGMPGDAEYFSSGSGSWSSEGSYWGGGEVQSNSNLVPFNRKTAKEARRPPLLRSSRGRLQKLPSRFNDSVLDTWKKAEEENEEGESCFEDDKSFVEDGRGGIEKCDSVCYSSRTVKAESNTSGLSFEGVDQKPNGGKRKEVYKPGDFALGDIVWAKCGKRYPAWPAVVIDPVLEAPESVLSCCVPGSLCVMFFGYSKNGTQRDYAWVKQGMVFPFSEFMDRFQGQTRLYKSKPSDFRMALEEAMLAEDGILESHLGGEEVADAEAHPDGLMEATRSYVDDEYFGLDQDTRYCAGCGMLLPCKTMKKIKDSNCTPQFYCKHCAKLRKSKQYCGICKRIWHHSDGGNWVCCDGCNVWVHAECDKISSRLFKDLENTDYYCPECKEKFNCKLPASQTHKEKIKSIESSQKPMIPETVLVVCNGMEGIYIPKLHLVMCKCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMQPLEKWMAEHIPLEGIPQQLDQQQVLAFLQEKYEPVNAKWTTERCAVCRWVEDWEDNKMIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPQVVFQNHEAMEPARGILKIPPNSFVKTCVICKQSHGSCITCCKCATYFHVMCASRAGYTMELHSMEKNGTQITKKLIYCAIHRVPNPDSVLVVHTPLGVFSPRTSLQNQKGCFRGSRLISSKNMELNESSITVNDMVEPLSAARCRVFRRSPNKRADVPIIHLLRGPSLHSLGAITQLNHYKDAEESKVFTSFKERLHHLWKTEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGVQVRRSVADLREAKYRSEGKDCYLFKISEEVVVDATNSGNIARLINHSCMPNCYARIMSLGDEESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRRFMN | 985 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g00583 | 985 | SUPERFAMILY | FYVE/PHD zinc finger | 552 | 616 | IPR011011 | - | |
| Cca11g00583 | 985 | Pfam | PHD-zinc-finger like domain | 607 | 719 | - | - | |
| Cca11g00583 | 985 | SMART | PWWP_4 | 186 | 255 | IPR000313 | - | |
| Cca11g00583 | 985 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 548 | 602 | IPR013083 | - | |
| Cca11g00583 | 985 | ProSiteProfiles | SET domain profile. | 843 | 960 | IPR001214 | GO:0005515 | |
| Cca11g00583 | 985 | CDD | PHD_ATX3_4_5_like | 553 | 599 | IPR042011 | - | |
| Cca11g00583 | 985 | Gene3D | - | 176 | 291 | - | - | |
| Cca11g00583 | 985 | SUPERFAMILY | Tudor/PWWP/MBT | 179 | 299 | - | - | |
| Cca11g00583 | 985 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 603 | 721 | IPR013083 | - | |
| Cca11g00583 | 985 | ProSiteProfiles | Zinc finger PHD-type profile. | 551 | 602 | IPR019787 | - | |
| Cca11g00583 | 985 | Pfam | PWWP domain | 189 | 285 | IPR000313 | - | |
| Cca11g00583 | 985 | CDD | PHD_TCF19_like | 370 | 420 | - | - | |
| Cca11g00583 | 985 | Gene3D | SET domain | 824 | 985 | IPR046341 | - | |
| Cca11g00583 | 985 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 985 | IPR025780 | - | |
| Cca11g00583 | 985 | ProSiteProfiles | Post-SET domain profile. | 969 | 985 | IPR003616 | - | |
| Cca11g00583 | 985 | ProSitePatterns | Zinc finger PHD-type signature. | 554 | 599 | IPR019786 | - | |
| Cca11g00583 | 985 | Pfam | SET domain | 854 | 959 | IPR001214 | GO:0005515 | |
| Cca11g00583 | 985 | ProSiteProfiles | Zinc finger PHD-type profile. | 367 | 423 | IPR019787 | - | |
| Cca11g00583 | 985 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 362 | 426 | IPR013083 | - | |
| Cca11g00583 | 985 | CDD | SET_SETD1-like | 832 | 981 | - | - | |
| Cca11g00583 | 985 | PANTHER | PHD FINGER PROTEINS | 1 | 985 | - | - | |
| Cca11g00583 | 985 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE | 1 | 985 | - | - | |
| Cca11g00583 | 985 | SUPERFAMILY | FYVE/PHD zinc finger | 367 | 428 | IPR011011 | - | |
| Cca11g00583 | 985 | SUPERFAMILY | SET domain | 837 | 981 | IPR046341 | - | |
| Cca11g00583 | 985 | ProSiteProfiles | PWWP domain profile. | 188 | 257 | IPR000313 | - | |
| Cca11g00583 | 985 | SMART | set_7 | 843 | 966 | IPR001214 | GO:0005515 | |
| Cca11g00583 | 985 | Pfam | PHD-finger | 369 | 423 | IPR019787 | - | |
| Cca11g00583 | 985 | Pfam | PHD-finger | 566 | 600 | - | - | |
| Cca11g00583 | 985 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 605 | 720 | IPR034732 | - | |
| Cca11g00583 | 985 | SMART | PostSET_3 | 969 | 985 | IPR003616 | - | |
| Cca11g00583 | 985 | SMART | PHD_3 | 664 | 720 | IPR001965 | - | |
| Cca11g00583 | 985 | SMART | PHD_3 | 553 | 600 | IPR001965 | - | |
| Cca11g00583 | 985 | SMART | PHD_3 | 369 | 421 | IPR001965 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca11g00583 | Cca-Chr11 | 9243080 | 9253761 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca11g00583 | 326 | 394 | EF-hand Containing Proteins | AT5G28340 | 57.971 | 1.84e-20 | 93.6 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Cca11g00583 | zf-HC5HC2H_2 | 3.6e-29 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g00583 | - | - | gmx:100793624 | 1809.27 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca11g00583 | 11 | 9243080 | 9253761 | Cca11g00583 | 11 | 9243080 | 9253761 | ECH |