Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00572 ATGGGAACTTCTATCACCTTCACTTTGATTGATGTGGGATTGGGGGGTGTGTGGAATGAGGAGGAGAAAGCGACGATGGTGGAGGTTTTGGGTCGTGGGGCGTTTGATTACTTAGCGGCGAATTCCGTTCCGAACGAGAATCTGTTAATGGCGTTTGGGAGTGGCGAGAATCTGCAGAACAAGCTTGCGGATCTGGTGGAGCGTCCAAACGCGTGGAACTTCAGTTGGAGCTACGCGATCTTGTGGCAGATTTCGCAGTCCAAGTAtggggattgggttttggggtggggagatgggtgttgTAGGGAGCCgagggagggagaagaggtgagagagagagGGGTGGTGgaggatgagaaggtgcagaggatgaggaagagggtgTTGCAGAAGCTGCACACTTCGTTTGGGGGTTCTGATGAGGACAATTATGCTTTTGGGTTGGACCGTGTTACTGACATGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCCGAGGAGTTGGGGGTCCAGGTAAGTGTTTTGCTTTTGGGAAGCATTTGTGGCTATTGGATGTGTTGAAATCTGGTTTTGATTACTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGAATTCGGACTGTTGTTTTAGTGCCTACTGATTTGGGGGTGGTGGAGGTGGGGTCTGTGAGGGTGGTGGGTGAGAGCTTTGAGTTGTTGCATGCTGTCAAATCTGTGTTTTCTTCACAGGCATCATTAGTCCCCCCTAGGGTTGTTAAGCCAATTGCACCATTGGATTTGGTAAGTGAGAAGAGGGATGAGAATGCAAATGCTGTTTTTTCTGGTTTGGCTATTGGGGATAAGAATAAGAATAGCAACGATGATAATAGTAGAGGTGAGGGAATTGCAGTTCCAATGACTTTTGGGCAGGATTTGAATCTTGTGGTCTCAGGTTCAAATATTGTGGATGGAAAAAACGTGGTTGAGGATAGTGCTTCTACTAAAGGTGGGCAACCAGGCTTTATGAGAGAGATTAATCATCAACGAAATCAATGGATACTTCATACCAATAATGCAGTTATACCAAAAGGAGTAGAGGGAATTGGAGTTCCAAAGATTTTTGGGCAGGATTTGAATTGTGTGACTCAATTCAGGGAGAAACTTGCTGTGAGAAAAATGGAGGAGAGTGGAGGGCATCCTAATGGGAGATCAATTATTGTTGAGTCTGAGATTTCTGATGTTGCTGAGGACAGGAGGCCGAGGAAGCGGGGAAGGAAGCCAGCTAATGGAAGGGAGGAACCCCTCAACCATGTGGAGGCTGAGAGGCAAAGGCGCGAGAAGCTGAACCAGCGATTCTATGCTCTGCGAGCTGTTGTTCCGAATATCTCTAAGATGGACAAGGCGTCGCTGTTGGGAGATGCCATTGCTTACATCAATGAGCTTCAAGCAAAACTCAAGACCATGGAGTCTGAGAGAGAGAGATTTGGAAGCACCTCTATGGATGGATCTGTAACCGAGGCCTACGCAAGAGTTGAAAATCATCATAATGGAGCTCTAGATGTGGATATTCAAGCTGCACAAGATGGGGTCATTGTACAGTTAAATCCAAAGGACCTGATCAGTTGA 1611 0.4358 MGTSITFTLIDVGLGGVWNEEEKATMVEVLGRGAFDYLAANSVPNENLLMAFGSGENLQNKLADLVERPNAWNFSWSYAILWQISQSKYGDWVLGWGDGCCREPREGEEVRERGVVEDEKVQRMRKRVLQKLHTSFGGSDEDNYAFGLDRVTDMEMFFLASMYFSFPRGVGGPGKCFAFGKHLWLLDVLKSGFDYCVRSFLAKSAGIRTVVLVPTDLGVVEVGSVRVVGESFELLHAVKSVFSSQASLVPPRVVKPIAPLDLVSEKRDENANAVFSGLAIGDKNKNSNDDNSRGEGIAVPMTFGQDLNLVVSGSNIVDGKNVVEDSASTKGGQPGFMREINHQRNQWILHTNNAVIPKGVEGIGVPKIFGQDLNCVTQFREKLAVRKMEESGGHPNGRSIIVESEISDVAEDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESERERFGSTSMDGSVTEAYARVENHHNGALDVDIQAAQDGVIVQLNPKDLIS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00572 536 Pfam Helix-loop-helix DNA-binding domain 431 477 IPR011598 GO:0046983
Cca11g00572 536 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 427 476 IPR011598 GO:0046983
Cca11g00572 536 PANTHER MYC 353 401 IPR045084 GO:0003700|GO:0006355
Cca11g00572 536 PANTHER MYC 396 529 IPR045084 GO:0003700|GO:0006355
Cca11g00572 536 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 58 242 IPR025610 -
Cca11g00572 536 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 396 529 - -
Cca11g00572 536 MobiDBLite consensus disorder prediction 388 438 - -
Cca11g00572 536 SMART finulus 433 482 IPR011598 GO:0046983
Cca11g00572 536 MobiDBLite consensus disorder prediction 405 438 - -
Cca11g00572 536 Gene3D - 420 492 IPR036638 GO:0046983
Cca11g00572 536 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 353 401 - -
Cca11g00572 536 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 10 334 - -
Cca11g00572 536 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 430 490 IPR036638 GO:0046983
Cca11g00572 536 PANTHER MYC 10 334 IPR045084 GO:0003700|GO:0006355
Cca11g00572 536 CDD bHLH_AtAIB_like 424 489 - -
Cca11g00572 536 Coils Coil 466 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00572 Cca-Chr11 9029800 9031877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00572 407 530 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 60.484 6.98e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00572 bHLH-MYC_N 1.3e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00572 - - ccaj:109808433 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00572 11 9029800 9031877 Cca11g00572 11 9029800 9031877 ECH
Cca03g03159 03 53008862 53013075 Cca11g00572 11 9029800 9031877 PCT