Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00571 ATGGCCGCCAAGGCCTACGACGTCGCCGCCTACTGCCTCAAGGGCCGCAAGGCGCAGCTCAACTTCCCCGACGAGGTCCACCGCCTCCCGCCGCTCCCCTCCGCCTGCACCGCCCGCGACATCCAGGCCGCCGCCGCCAAGGCCGCCCACATGATGATGGCCTCCGCCGCCGCCCCCCCCGAAACCTCCATTTCCCCCGACGACGCCGCCGACGACTTCTGGCGCGAGATTGAGCTGCCGGAGCTCCTCCTCCTCCACGGTGGCGGCAGCAGCAGGTGGTGGACCTCCGACCTCCCGCCCTGGCCCGAGCCCGACCTCCCGCCGCAGCATCCCTTCACCACCGCCGCCTGCTTGTAG 357 0.7255 MAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPSACTARDIQAAAAKAAHMMMASAAAPPETSISPDDAADDFWREIELPELLLLHGGGSSRWWTSDLPPWPEPDLPPQHPFTTAACL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00571 118 MobiDBLite consensus disorder prediction 99 118 - -
Cca11g00571 118 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 118 - -
Cca11g00571 118 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 118 - -
Cca11g00571 118 Gene3D AP2/ERF domain 1 24 IPR036955 GO:0003700|GO:0006355
Cca11g00571 118 ProSiteProfiles AP2/ERF domain profile. 1 23 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00571 Cca-Chr11 8997518 8997874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00571 1 88 AP2-EREBP Transcription Factor Family AT1G01250 59.091 2.53e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00571 K09286 - gmx:100806544 131.339