Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00569 ATGAGTTCAAAGGGATTGCGTTGCTTAGGTTTTGCATTCAACGATGACTTGGGAGAATTTTCAGATTACTATGCTGAAACTCATCCTGCTCACAAGAAATTGCTTGATCCAACATACTACTCATCCATTGAAAGTGATCTAGTTTTTGTTGGCATTGTTGGCTTAAGGGACCCTCCCCGTGAGGAGGTTCATAGAGCAATTGGGGATTGTAAGGACGCTGGGATTAGAGTTATGgatgatgatagtgttgttatgttGGAGTTGTTATTGTTGGTGGTTTCAGAAAAAGAAAAAGAAGCACTTTGTAGTTTGTAA 315 0.3746 MSSKGLRCLGFAFNDDLGEFSDYYAETHPAHKKLLDPTYYSSIESDLVFVGIVGLRDPPREEVHRAIGDCKDAGIRVMDDDSVVMLELLLLVVSEKEKEALCSL 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00569 104 Gene3D - 59 78 IPR023214 -
Cca11g00569 104 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 63 IPR023299 GO:0000166
Cca11g00569 104 PANTHER CALCIUM-TRANSPORTING ATPASE 1 78 - -
Cca11g00569 104 Gene3D - 2 58 IPR023299 GO:0000166
Cca11g00569 104 PANTHER CALCIUM-TRANSPORTING ATPASE 2, ENDOPLASMIC RETICULUM-TYPE 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00569 Cca-Chr11 8868965 8877039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00569 1 78 Primary Pumps ATPases(2) AT4G00900 75.641 5.51e-40 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00569 K01537 - ccaj:109806927 161.384