Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00568 ATGGCACATCTGGAGTGTAATCTGAGGGGTCCCGGGGGTGGAAGTTCTCAACCGGAAAAAGGTTTGAAGGATGACGATCTGTACAGAGAGCTATGGAAGTTGTGTGCAGGGCCTTTGGTGGATGTTCCTCGTACTGGGGACAGAGTTTTCTACTTCCCACAGGGTCACATGGAACAATTGCAAGCATCTACGGATCAGGAATTGAACCAGGAAATTCCCCATTTCAATCTCCCGGCCAAGATTTTTTGCCGTGTTGTGAACATTCAgttgttgGCGGAACAAGACACTGATGAGGTTTATGCTTGCATCGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTACAAATCCTGATCCAAATGTTTCTGAGACCCCAAAACAGAAGTTTCACTCATTTTGCAAGATATTAACTGCCTCTGATACAAGCACACATGGAGGATTTTCGGTTCTGCGGAAGCATGCTACTGAGTGCCTACCTCCATTGGACATGACTCAAGCAACCCCAACTCAGGAGTTGGCAGCAAAGGACCTTCATGGATTTGAGTGGAAGTTTAAGCATATATACAGGGgtcaaccaaggaggcacttgcttacaactggttggagcacatttgttgcatctaaaagattggttgctggagatgcttttgtgtttctaagGGGAGAGCATGGAAAATTGAGAGTTGGTGTTAGGCGTTTAGCGCGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCACCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTCATGACTCGTACAATGTTTTTGGTTTATTACAAGCCAAGGACTAGTCAGTTTATTGTTGGTTTGAACAAATATCTAGAGGCAGTGAACAATAAGTTTTCGGTTGGCATGAGATTCAAGATGAGATTTGAGGGGGATGACTCACCCGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTAGGGGACGTTTCTGCAGGATGGTCAAATTCTCAGTGGCGTTCATTGAAGATTCAATGGGATGAACCTGCTACAATTCCAAGGCCAGATAGAGTTTCTTGCTGGGAGATAGAGCCTTTTGTAGCTTCTACTACTTTGAATGTCACTCAACCAGCAGTGAAGGGCAAAAGGTCTAGGCCTAATGAAGTTTCATCTTCTGCTGCTTCAGGTTTCTGGTATCATGGTTCTTCCCAGTCTCACGAGCTTGGTCAATTAGGTGCTGCTGCTGTTGTTGAAGTCCAAAGCAAGGAAAATCAAGTTACATGCTCTTTAAGGCAGAAAGATGTTATTAATAGCAATCCTATTAATGCTAACTCTAGAGTCCGGGTGGAAGGAGTATGGCCTTGTTCACCACATGTGAATGTTTCTTCCAAAAATTTTTCTGATCCTAATATCAACAATTGCGTTTCGGCACGATCATCTATCTCTGGTTACCCTAATGTTCCATCAAGATCAAGTGATGGCCCCACATGTGAGGGAGGGGAAGATGGGAAAAGAAGTGAGAATTCCCTTGATTGCTGGTTATTTGGAGTTAATTTGAGCAACAATTGTAGCAATGTTGTTATTAGTCCTTCAGAGAGAGGTGGAAGCTTAAGTATTGTTGGTAGTGGTCCCAAAGAATCTATTCCTGCAGCTGCATGTGAAACTGAGAGGGTTCAGACTCCCAACTATTCACTGTCCAACAAGCAAATTATTTCTGAGGCATCACCAAATGAGTGGCAGAACAAGCAGGCCACTGTACCATCCATGAGGACGCGGACTAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCATTTGACTTGACCACGTTGAGTGGCTATGATGACCTCATAGATGAGCTTGAGAAATTGTTTGATATCAAAGGAGAGCTGCGTTCACAAAACAAATGGGCAGTTACTTTCACAGATGATGAAAATGACATGATGCTCGTTGGTGATGATCCATGGCCGGAATTCTGCAACATGGTGAAGAGGATCTTGATTTGTTCAAGGGAGGACTTGAAGAAGATGAAATGCTGCAAGCTACCTGCTTCTTCATCAGAGATTGAAGAGACTCTCTTGAGTCCAGATTCACAGAATAGGGATGAGACTCAACAATCTCACATGGCCTAG 2115 0.4251 MAHLECNLRGPGGGSSQPEKGLKDDDLYRELWKLCAGPLVDVPRTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPAKIFCRVVNIQLLAEQDTDEVYACIALLPESDQTEPTNPDPNVSETPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGKLRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEAVNNKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDVSAGWSNSQWRSLKIQWDEPATIPRPDRVSCWEIEPFVASTTLNVTQPAVKGKRSRPNEVSSSAASGFWYHGSSQSHELGQLGAAAVVEVQSKENQVTCSLRQKDVINSNPINANSRVRVEGVWPCSPHVNVSSKNFSDPNINNCVSARSSISGYPNVPSRSSDGPTCEGGEDGKRSENSLDCWLFGVNLSNNCSNVVISPSERGGSLSIVGSGPKESIPAAACETERVQTPNYSLSNKQIISEASPNEWQNKQATVPSMRTRTKVQMQGVAVGRAFDLTTLSGYDDLIDELEKLFDIKGELRSQNKWAVTFTDDENDMMLVGDDPWPEFCNMVKRILICSREDLKKMKCCKLPASSSEIEETLLSPDSQNRDETQQSHMA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00568 704 Pfam B3 DNA binding domain 132 232 IPR003340 GO:0003677
Cca11g00568 704 ProSiteProfiles PB1 domain profile. 584 665 IPR000270 GO:0005515
Cca11g00568 704 MobiDBLite consensus disorder prediction 476 499 - -
Cca11g00568 704 CDD B3_DNA 130 232 IPR003340 GO:0003677
Cca11g00568 704 Pfam Auxin response factor 258 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca11g00568 704 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Cca11g00568 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 681 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca11g00568 704 SUPERFAMILY DNA-binding pseudobarrel domain 121 261 IPR015300 -
Cca11g00568 704 MobiDBLite consensus disorder prediction 684 704 - -
Cca11g00568 704 Gene3D - 129 233 IPR015300 -
Cca11g00568 704 PANTHER AUXIN RESPONSE FACTOR 11 13 681 - -
Cca11g00568 704 SUPERFAMILY CAD & PB1 domains 580 660 - -
Cca11g00568 704 MobiDBLite consensus disorder prediction 1 22 - -
Cca11g00568 704 Pfam AUX/IAA family 627 667 IPR033389 -
Cca11g00568 704 Pfam AUX/IAA family 576 620 IPR033389 -
Cca11g00568 704 Gene3D - 580 672 - -
Cca11g00568 704 SMART B3_2 132 234 IPR003340 GO:0003677
Cca11g00568 704 Gene3D - 293 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00568 Cca-Chr11 8864594 8868928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00568 27 671 B3 DNA Binding Superfamily AT4G23980 56.355 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca11g00568 B3 5.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00568 K14486 - gmx:100790981 1279.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00568 11 8864594 8868928 Cca11g00568 11 8864594 8868928 ECH