Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00559 ATGGGAAGAGCACCTTGTTGCTCCAAAGTTGGCTTGCACAAAGGTCCATGGACTCCTAAAGAGGATGCATTGCTTACCAAGTATATTCAAGCCCATGGAGAAGGCCAATGGAAATCTCTACCAAAAAAAGCTGGGCTTCTTAGATGTGGAAAAAGTTGTAGATTGAGATGGATGAACTACCTTAGACCAGACATAAAGAGAGGGAACATAACAGCAGAAGAAGATGATCTTATAATCAGAATGCATTCACTTTTGGGGAATAGATGGTCCCTCATAGCAGGAAGGTTACCAGGTAGAACAGACAATGAAATAAAGAACTATTGGAACACCCATCTAAGCAAAAAGGTGAAAAATCAAGGAACAGATGAGACCAACACAATAGGGAATCCCCAACAAGAGCCACCAAAAAGGAAGAAAAACGGTGGCaaaaagacaaagaagaacaagcagaagaagaaAGGGAGCACAAATACTAATGCTGATGAGGCACCAAAGACACAGGTTTATTTGCCAAAGCCCATCAGAGTGAAGGCTATGTATTTGGCTAGAACAGATAGTAACACCTTCACCTTTGATTCGAATTCCCCTAGTGGATCCACGAGCCAAGAAGAAAAGGAGGAGTGCCCCGTGACAAAGGAATCAAACATGGTTAGTGAAGTTGGTAACGAGGGAGAAAGTGATGGTTTTGGCTTCTTCAGTGTAGACCATGACTTGGTCAACGCCTCAGATATTGAATGCCACTCTTATTTTCACACGGAGGATCATGGCACACTGCAGAAAGTTTATGAAGAATATTTCCAGCTCTTGAACATGGACCATGCCCAATTCGATATCAATTCTTACGAAGATTTTTTGTTGGAGTGA 864 0.4086 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITAEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKVKNQGTDETNTIGNPQQEPPKRKKNGGKKTKKNKQKKKGSTNTNADEAPKTQVYLPKPIRVKAMYLARTDSNTFTFDSNSPSGSTSQEEKEECPVTKESNMVSEVGNEGESDGFGFFSVDHDLVNASDIECHSYFHTEDHGTLQKVYEEYFQLLNMDHAQFDINSYEDFLLE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00559 287 MobiDBLite consensus disorder prediction 115 133 - -
Cca11g00559 287 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 278 - -
Cca11g00559 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca11g00559 287 MobiDBLite consensus disorder prediction 187 204 - -
Cca11g00559 287 CDD SANT 16 61 IPR001005 -
Cca11g00559 287 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca11g00559 287 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca11g00559 287 PANTHER MYB TRANSCRIPTION FACTOR 1 278 - -
Cca11g00559 287 SMART sant 13 63 IPR001005 -
Cca11g00559 287 SMART sant 66 114 IPR001005 -
Cca11g00559 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca11g00559 287 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca11g00559 287 MobiDBLite consensus disorder prediction 115 168 - -
Cca11g00559 287 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca11g00559 287 Gene3D - 71 167 - -
Cca11g00559 287 MobiDBLite consensus disorder prediction 139 153 - -
Cca11g00559 287 CDD SANT 71 112 IPR001005 -
Cca11g00559 287 Gene3D - 14 66 - -
Cca11g00559 287 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca11g00559 287 MobiDBLite consensus disorder prediction 187 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00559 Cca-Chr11 8692908 8694242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00559 1 210 MYB Transcription Factor Family AT4G38620 52.857 6.65e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g00559 Myb_DNA-binding 9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00559 K09422 - gmx:100101857 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00559 11 8692908 8694242 Cca11g00559 11 8692908 8694242 ECH
Cca03g03166 03 53100178 53100840 Cca11g00559 11 8692908 8694242 PCT