Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00558 ATGGAGGGGATGGCTCCGAATTCATGTGCCAGGCCAGTTTTAGAGAAGAAAGCAAGGCCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAACCCAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCCCTGAGAAACGTTCCAGTTGGAGGTGGTTCTAGGAAGAATAAGAAGGTAACTtcagcaacttcatcatcatcatcatcatcaAAGGTTCCAGACCTAAACCCACCAAACCTCTCATCAGTCTCAGCCCAAAACCCTAAAATCATGCATGGAGGCCAAGATCTCAACCTGGCTTTCCCATCTATGGACAAATACCATCATGGCATGCCCCCTTATGTTGAGATGCAGCAGCAGAACAACAGTGACACCACTCATCACCACCAACACCAAACCTCTTCTTCTTGTTCTGCTCCTCCAGCTTCTCTTTCAGCCCTAGAGCTTCTAAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTTCTTCCTTGATCCCAAACTCAACAAACAACAATGCCCTTTACCCATCAGGGTTTCCCATGCAAGAAGTTAAACCAAGCCTCAGCTTTGCTCCTTCAGTTGATGGCATGGGAAATAGGTCATATGATCATCAGGTCCAAGAGAGGAGTGGTGGAAGGGTTTTATTCCCTTTTGGAGATGTCAAGCAACTTTCTGCTTCAGGTGCTGAAGTGGAACACAATAAAGAACAAGGCAATTCAACTGGATATTGGAGTGGAATGATTGGTGAAGGAACATGGTAA 831 0.4465 MEGMAPNSCARPVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSATSSSSSSSKVPDLNPPNLSSVSAQNPKIMHGGQDLNLAFPSMDKYHHGMPPYVEMQQQNNSDTTHHHQHQTSSSCSAPPASLSALELLRSSMASRGLNPYAPSSLIPNSTNNNALYPSGFPMQEVKPSLSFAPSVDGMGNRSYDHQVQERSGGRVLFPFGDVKQLSASGAEVEHNKEQGNSTGYWSGMIGEGTW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00558 276 MobiDBLite consensus disorder prediction 135 160 - -
Cca11g00558 276 MobiDBLite consensus disorder prediction 134 160 - -
Cca11g00558 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 271 IPR045174 GO:0003700|GO:0006355
Cca11g00558 276 MobiDBLite consensus disorder prediction 1 21 - -
Cca11g00558 276 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Cca11g00558 276 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Cca11g00558 276 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Cca11g00558 276 MobiDBLite consensus disorder prediction 65 114 - -
Cca11g00558 276 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 7 271 - -
Cca11g00558 276 MobiDBLite consensus disorder prediction 76 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00558 Cca-Chr11 8602033 8604248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00558 16 276 C2C2-Dof Transcription Factor Family AT3G61850 50.709 5.59e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca11g00558 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00558 - - gmx:778110 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00558 11 8602033 8604248 Cca11g00558 11 8602033 8604248 ECH
Cca11g00558 11 8602033 8604248 Cca03g03168 03 53110829 53119264 ECH
Cca03g03168 03 53110829 53119264 Cca11g00558 11 8602033 8604248 PCT