Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00556 ATGAATTCTGGTATTATGTTGGCATTGCCTCCCATGAGCAATGTGTTCAAGACAAAGGAGCCTCGTGATTTTGAGGAAGACTTTGCGGAGAAAGATCCAACTGGACGATACATAAGGTACAATGAAATTTTGGGCAGGGGTGCCTTTAAAACAGTTTATAGGGGTTTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAACTTAAGATCGATGGTCTCTTGCATTCAATAGATGATATTGCAAAATTGTATTTTGAAGTTAATCTATTGAAGTCTTTGAATCATGAAAATATCATTAAGTTCTATGATTCTTGGATTGATGATAAGCAAAACACTGTTAATATGATTACTGAACTCTTCACATCAGGAAATTTAAGGCAATATCGTAAGAAGCATACATATGTTGAAATGAAAGCTATAAAAGATTGGGCTAGACAGATTCTTCAAGGCTTATTATATCTTCATAGTCACAAACCACCTATTATTCATAGAGACTTAAAATGTGACAACATCTTTGTGAATGGAAACCAAGGTGAAGTTAAGATTGGGGACCTTGGATTGGCAGTTGTCATGCAACAACCAACTGCCCGAAGCGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGTCGTACACTGAACTTGTTGACATTTATTCTTTTGGAATGTGCATATTGGAGATGGTTACTCTCGAGTATCCCTATAGTGAATGCAAAAATCCAGCTCAAATCTTTAAAAAAGTTACCTCGGGCATCAAACCTGCTTCCCTTAATAAGGTGAATGATCCTCAAATTAAGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTAAAAGATTGTCAGCAGAAGAGCTTCTTAAAGATCCATTTCTACATGTTGAAAATGTTAAGGATCCCATCCTTTTCCCTCCACAACCACCTAGCAGAACACTAAGAGCTATGTATTCATTCAAGTCTAGTTCTCAATCTATGGACATGGATGCTGACTACAAACAATTTTCTTTGAGTATTTGTTCTGAAAGAAACCAAGGAAGCTCACATTGTCCTGTTTTTGAAGTGCAAAGGGCAAATAAAAATAATGAATTTAAGTTGAAAGGGACTAAAAATGATGATAACTCAGTATCATTGACATTGCGTATTGCTGACACATCTGCAGGTCGAGTAAGGAATATACATTTTCTCTTTTACCTTGATACAGATACTGCTGTCTCTGTGGCCACAGAGATGGTTGAACATTTGGAGTTGGCAGATCATGATGTACCTGTTATAGCTGAGCTTATTGATTACTTGATAATGAAACTTCTTCCTTGGTGGAAACCCTCACCTGATCATTACTCATATGGAGAATTAAGTCTTTATGGTCCAAATATAGATAGTCAAACCTTTATGGCATGCCCATGGGGTTCTGTCCTAACTGGTATTCCATCTGAATCTGTTATTGACCAAGATGATTTCTCTGGGATTGACATAATTCCCAAAGATGATTTTGTGGTAGCTAAAATGAGTAGTTTTTCAAAAAATGTTGATAATGCAACTTTTGATGGTGATTATAATTCTTCTAATTTAGTTAACTTGGAAGACCGATATTCACAAGGATCTAGAGCTTATGAGATGGATGCTGGAAATACTAATGTGAAAAATGATAACTATCATGATTCTAATGTTGATGTAAGTTTTAAATGCTTAAGTAGGTCTATCTCTAAACTTGAGGATAAAGATGCATATTTTGAGGACTATAAATTGCAAGCAGAAGATTATTCAATTGGGGAAGAAATAGTGGTAAATGAATTTCCAACAAACATGGGGGGAGTTCTTGGAGCATCTACTAATGTTGAGAGTCCAACAATTAGTTGTTCTTATTTATCTTCAACAGATGAAGACATTGATCTTGAGTTAAAATTTGAACTTCATGTAATCGAGTCGCATTATCAACATTGGATTGATGAACTTAATAAAATAAAGCTAGAGGCATTGGAAGCCACAAAAAGGAGATGGATGGCCAAGAAGAAATTGGTTGTTCTTTGA 2037 0.3574 MNSGIMLALPPMSNVFKTKEPRDFEEDFAEKDPTGRYIRYNEILGRGAFKTVYRGFDEVDGIEVAWNQLKIDGLLHSIDDIAKLYFEVNLLKSLNHENIIKFYDSWIDDKQNTVNMITELFTSGNLRQYRKKHTYVEMKAIKDWARQILQGLLYLHSHKPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAVVMQQPTARSVIGTPEFMAPELYEESYTELVDIYSFGMCILEMVTLEYPYSECKNPAQIFKKVTSGIKPASLNKVNDPQIKEFIEKCLVPASKRLSAEELLKDPFLHVENVKDPILFPPQPPSRTLRAMYSFKSSSQSMDMDADYKQFSLSICSERNQGSSHCPVFEVQRANKNNEFKLKGTKNDDNSVSLTLRIADTSAGRVRNIHFLFYLDTDTAVSVATEMVEHLELADHDVPVIAELIDYLIMKLLPWWKPSPDHYSYGELSLYGPNIDSQTFMACPWGSVLTGIPSESVIDQDDFSGIDIIPKDDFVVAKMSSFSKNVDNATFDGDYNSSNLVNLEDRYSQGSRAYEMDAGNTNVKNDNYHDSNVDVSFKCLSRSISKLEDKDAYFEDYKLQAEDYSIGEEIVVNEFPTNMGGVLGASTNVESPTISCSYLSSTDEDIDLELKFELHVIESHYQHWIDELNKIKLEALEATKRRWMAKKKLVVL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00556 678 SMART serkin_6 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00556 678 SUPERFAMILY Protein kinase-like (PK-like) 40 341 IPR011009 -
Cca11g00556 678 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 676 - -
Cca11g00556 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Cca11g00556 678 Gene3D Transferase(Phosphotransferase) domain 1 121 301 - -
Cca11g00556 678 Gene3D - 376 440 - -
Cca11g00556 678 ProSiteProfiles Protein kinase domain profile. 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00556 678 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 435 IPR024678 GO:0004674|GO:0005524
Cca11g00556 678 CDD STKc_WNK 36 295 - -
Cca11g00556 678 PANTHER KINASE DOMAIN PROTEIN 3 676 - -
Cca11g00556 678 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Cca11g00556 678 Pfam Protein kinase domain 41 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00556 Cca-Chr11 8567056 8571105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00556 25 438 MAP Kinase Kinase Kinase AT1G64630 61.502 8.11e-173 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca11g00556 Pkinase 1.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00556 K08867 - gmx:100809602 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00556 11 8567056 8571105 Cca11g00556 11 8567056 8571105 ECH