Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00554 ATGACTTCCTCCAACCTTCAAATCTCACCTGACTACTATATTAATTTAAAATTATCTCTCTCATTCTTCGAACCCAAAAAATTCCAAAGCTTTTTTTTTTCAGATTTGATTTTGAAAGCGAATTGGGAGAACAGGATGAGGCCGATTTTTGCTGGGAACTTGGAGTATGATACTCGTCAATCAGAGCTTGAACGCTTGTTCTCAAAGTATGGCAGGATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTTTATTATGAGGATGAGCGTGATGCCGAAGAAGCAATTCGTGCACTTGACAATATTCCATTTGGTCATGAAAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGACGTCATCGGGATGGATCGAAGGCAAACCAGAGGCCAACAAAAACCCTTTTTGTGATTAACTTTGACCCAATCCGTACTAGAGTTCGTGATATAGAAAAACACTTTGAACCTTATGGGAATGTTCTTCATGTTCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACCAAAGCTTTAGAGTGTACAAATATGAGTAAGATCTTGGACAGGGTGGTGTCTGTGGAGTATGCCCTGAGGGATGACGGTGAGAGGGGTGATAATTATGACAGTCCTAGAAGAGGAGGTTATGAGAGATCGCCCAGTCCAGCTTATCGAAGGCGGCCAAGTCCTGACTATGGCCGTCCTCGCAGCCCTGCATATGATAGATATAACGGTGGACCAGATAGACGGAGTCCTGATTATGGTAGGCGTAGGAGTCCTGATTATGGTAGGCGTAGGAGTCCTGATTATGGAAGGCGCAGGAGTCCTGATTATGGGAAGCATAGGAGTCCTGAATATGGTAGATACCGCAGTCGCTCACCGGTGCGAAGGTCAAGAACATAA 927 0.4477 MTSSNLQISPDYYINLKLSLSFFEPKKFQSFFFSDLILKANWENRMRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNIPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYERSPSPAYRRRPSPDYGRPRSPAYDRYNGGPDRRSPDYGRRRSPDYGRRRSPDYGRRRSPDYGKHRSPEYGRYRSRSPVRRSRT 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00554 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 107 IPR000504 GO:0003723
Cca11g00554 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 200 IPR000504 GO:0003723
Cca11g00554 308 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 50 248 IPR029537 GO:0000398|GO:0005681
Cca11g00554 308 MobiDBLite consensus disorder prediction 254 300 - -
Cca11g00554 308 SUPERFAMILY RNA-binding domain, RBD 47 210 IPR035979 GO:0003676
Cca11g00554 308 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 50 248 - -
Cca11g00554 308 SMART rrm1_1 137 203 IPR000504 GO:0003723
Cca11g00554 308 SMART rrm1_1 48 115 IPR000504 GO:0003723
Cca11g00554 308 Gene3D - 128 218 IPR012677 -
Cca11g00554 308 Gene3D - 39 127 IPR012677 -
Cca11g00554 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 207 IPR000504 GO:0003723
Cca11g00554 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 119 IPR000504 GO:0003723
Cca11g00554 308 MobiDBLite consensus disorder prediction 209 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00554 Cca-Chr11 8551062 8554665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00554 49 209 Eukaryotic Initiation Factors Gene Family AT1G49760 23.626 4.97e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00554 K12893 - gmx:100797709 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00554 11 8551062 8554665 Cca11g00554 11 8551062 8554665 ECH